EnhancerDB
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  3. rs7968539[chr12:53353123]
Enhancers that have rs7968539[chr12:53353123]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 53348905 53377069 enh14737
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Lung (A549) Thyroid Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs7968539[chr12:53353123]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 53352016 53353345 ZNF143 GTRD no Epithelial (MCF-7) 21548181
chr12 53352055 53353583 ZBTB33 GTRD no Lung (A549) 21548182
chr12 53352108 53353294 ZNF143 GTRD no Epithelial (MCF-7) 21548184
chr12 53352158 53353617 ZNF274 GTRD no Cervix (HeLa-S3) 21548185
chr12 53352163 53353513 ZNF274 GTRD no Cervix (HeLa-S3) 21548186
chr12 53352171 53353472 ZBTB33 GTRD no Lung (A549) 21548187
chr12 53352180 53353262 ZNF274 GTRD no Cervix (HeLa-S3) 21548188
chr12 53352227 53353754 ZNF274 GTRD no Bone Marrow (K562) 21548189
chr12 53352231 53353342 ZNF143 GTRD no Epithelial (MCF-7) 21548190
chr12 53352248 53353194 ZNF274 GTRD no Cervix (HeLa-S3) 21548191
chr12 53352284 53353181 CTCF GTRD no Spleen 21548192
chr12 53352299 53353562 ZBTB33 GTRD no Lung (A549) 21548193
chr12 53352307 53353151 ZNF274 GTRD no Bone Marrow (K562) 21548194
chr12 53352312 53353586 ZBTB33 GTRD no Lung (A549) 21548195
chr12 53352323 53353495 ZBTB33 GTRD no Lung (A549) 21548198
chr12 53352325 53353318 ZNF274 GTRD no Bone Marrow (K562) 21548199
chr12 53352327 53353214 ZBTB33 GTRD no Lung (A549) 21548200
chr12 53352344 53353514 ZNF274 GTRD no Bone Marrow (K562) 21548201
chr12 53352349 53353638 ZBTB33 GTRD no Lung (A549) 21548202
chr12 53352356 53353183 ZNF143 GTRD no Epithelial (MCF-7) 21548203
chr12 53352361 53353305 ZNF274 GTRD no Bone Marrow (K562) 21548204
chr12 53352361 53353400 ZNF274 GTRD no Bone Marrow (K562) 21548205
chr12 53352378 53353553 ZBTB33 GTRD no Lung (A549) 21548207
chr12 53352392 53353174 ZNF274 GTRD no Liver (HepG2) 21548209
chr12 53352395 53353182 ZBTB33 GTRD no Lung (A549) 21548210
chr12 53352401 53353306 ZNF143 GTRD no Epithelial (MCF-7) 21548211
chr12 53352404 53353194 ZNF274 GTRD no Liver (HepG2) 21548212
chr12 53352411 53353136 ZBTB33 GTRD no Lung (A549) 21548213
chr12 53352421 53353373 ZNF274 GTRD no Cervix (HeLa-S3) 21548215
chr12 53352422 53353125 ZNF143 GTRD no Epithelial (MCF-7) 21548216
chr12 53352430 53353179 ZNF274 GTRD no Cervix (HeLa-S3) 21548217
chr12 53352456 53353281 ZNF274 GTRD no Liver (HepG2) 21548219
chr12 53352468 53353665 ZNF274 GTRD no Bone Marrow (K562) 21548222
chr12 53352481 53353630 ZNF274 GTRD no Bone Marrow (K562) 21548223
chr12 53352491 53353537 ZNF274 GTRD no Cervix (HeLa-S3) 21548225
chr12 53352496 53353143 ZNF274 GTRD no Cervix (HeLa-S3) 21548227
chr12 53352503 53353270 ZBTB33 GTRD no Lung (A549) 21548229
chr12 53352507 53353140 ZNF274 GTRD no Bone Marrow (K562) 21548230
chr12 53352509 53353265 ZNF274 GTRD no Cervix (HeLa-S3) 21548232
chr12 53352513 53353301 ZBTB33 GTRD no Lung (A549) 21548234
chr12 53352529 53353437 ZNF274 GTRD no Cervix (HeLa-S3) 21548238
chr12 53352532 53353155 ZBTB33 GTRD no Lung (A549) 21548239
chr12 53352537 53353286 ZNF143 GTRD no Epithelial (MCF-7) 21548241
chr12 53352540 53353201 ZNF143 GTRD no Epithelial (MCF-7) 21548242
chr12 53352551 53353341 ZNF274 GTRD no Cervix (HeLa-S3) 21548244
chr12 53352622 53353373 ZNF274 GTRD no Cervix (HeLa-S3) 21548251
chr12 53352634 53353387 ZBTB33 GTRD no Lung (A549) 21548252
chr12 53352654 53353343 ZNF274 GTRD no Liver (HepG2) 21548257
chr12 53353082 53353306 ZNF143 GTRD no Epithelial (MCF-7) 21548263
chr12 53353120 53353134 POU1F1 JASPAR yes 120966381
chr12 53353121 53353133 POU3F1 JASPAR yes 120966382
chr12 53353121 53353133 POU3F2 JASPAR yes 120966383
chr12 53353121 53353134 POU3F3 JASPAR yes 120966384
chr12 53353122 53353134 POU2F1 JASPAR yes 120966385
chr12 53353123 53353132 POU3F4 JASPAR yes 120966386
chr12 53353123 53353132 POU5F1B JASPAR yes 120966387
Genes associated with rs7968539[chr12:53353123], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr12 52753790 52761265 - KRT85 ENSG00000135443.4 52761265 591858 Thyroid 0.0143922 12084
chr12 53342655 53346685 + KRT18 ENSG00000111057.6 53342655 6438 Adrenal 0.326913 12106