EnhancerDB
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Enhancers that have rs8080053[chr17:39706586]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39688905 39708275 enh17150
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Breast Muscle (Myoblast) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs8080053[chr17:39706586]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39704990 39706666 TCF7L2 GTRD no Colon (HCT116) 21757853
chr17 39704990 39706666 TCF7L2 GTRD no Colon (HCT116) 108258973
chr17 39705312 39706588 ZNF143 GTRD no Epithelial (MCF-7) 21757878
chr17 39705312 39706588 ZNF143 GTRD no Epithelial (MCF-7) 108259017
chr17 39705340 39706641 ZNF143 GTRD no Epithelial (MCF-7) 21757880
chr17 39705340 39706641 ZNF143 GTRD no Epithelial (MCF-7) 108259019
chr17 39705350 39706956 ZNF143 GTRD no Epithelial (MCF-7) 21757884
chr17 39705350 39706956 ZNF143 GTRD no Epithelial (MCF-7) 108259023
chr17 39705362 39706624 TCF7L2 GTRD no Colon (HCT116) 21757885
chr17 39705362 39706624 TCF7L2 GTRD no Colon (HCT116) 108259024
chr17 39705389 39706597 ZNF143 GTRD no Epithelial (MCF-7) 21757886
chr17 39705459 39706645 ZNF143 GTRD no Epithelial (MCF-7) 21757890
chr17 39705488 39706660 ZNF143 GTRD no Epithelial (MCF-7) 21757893
chr17 39705524 39706717 ZNF143 GTRD no Epithelial (MCF-7) 21757898
chr17 39705587 39706910 ZNF143 GTRD no Epithelial (MCF-7) 21757916
chr17 39705648 39706628 ZNF143 GTRD no Epithelial (MCF-7) 21757927
chr17 39705720 39706597 ZNF143 GTRD no Epithelial (MCF-7) 21757940
chr17 39706578 39706588 TBX21 JASPAR yes 54264177
chr17 39706578 39706591 EOMES JASPAR yes 54264178
chr17 39706579 39706587 TBX15 JASPAR yes 54264179
chr17 39706579 39706587 TBX4 JASPAR yes 54264180
Genes associated with rs8080053[chr17:39706586], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr17 39679869 39684560 - KRT19 ENSG00000171345.9 39684560 22026 Breast 0.223987 15831