EnhancerDB
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Enhancers that have rs833478[chr12:49279287]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 49273705 49285739 enh29564
Prostate (PC-3) Brain (SK-N-SH) Large Intestine Esophagus Astrocyte Lung (A549) Stomach Lung (PC-9) Pancreas Uterus Epithelial (MCF-7)
Transcript factors that have rs833478[chr12:49279287]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 49274451 49280808 ZNF143 GTRD no Epithelial (MCF-7) 21544296
chr12 49274451 49280808 ZNF143 GTRD no Epithelial (MCF-7) 108029562
chr12 49274451 49280808 ZNF143 GTRD no Epithelial (MCF-7) 108029563
chr12 49275917 49279482 ZNF143 GTRD no Epithelial (MCF-7) 21544311
chr12 49275917 49279482 ZNF143 GTRD no Epithelial (MCF-7) 108029576
chr12 49275917 49279482 ZNF143 GTRD no Epithelial (MCF-7) 108029577
chr12 49278741 49279441 ZNF143 GTRD no Epithelial (MCF-7) 21544348
chr12 49278766 49279343 ZNF143 GTRD no Epithelial (MCF-7) 21544350
chr12 49278769 49279418 ZNF143 GTRD no Epithelial (MCF-7) 21544351
chr12 49278780 49279343 ZNF143 GTRD no Epithelial (MCF-7) 21544353
chr12 49278797 49279288 ZNF143 GTRD no Epithelial (MCF-7) 21544356
chr12 49279277 49279298 IRF1 JASPAR yes 120753346
chr12 49279281 49279296 PRDM1 JASPAR yes 120753347
chr12 49279281 49279302 IRF1 JASPAR yes 120753348
chr12 49279282 49279297 FOXP1 JASPAR yes 120753349
chr12 49279282 49279303 IRF1 JASPAR yes 120753350
chr12 49279283 49279304 IRF1 JASPAR yes 120753351
chr12 49279284 49279298 IRF7 JASPAR yes 120753352
chr12 49279285 49279299 STAT1 JASPAR yes 120753353
chr12 49279285 49279300 STAT2 JASPAR yes 120753354
chr12 49279287 49279302 PRDM1 JASPAR yes 120753355
chr12 49279287 49279308 IRF1 JASPAR yes 120753356
Genes associated with rs833478[chr12:49279287], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More