EnhancerDB
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  3. rs9427727[chr1:202038945]
Enhancers that have rs9427727[chr1:202038945]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 202022729 202063855 enh12534
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Epithelial (MCF-7) Stomach Brain (SK-N-SH) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs9427727[chr1:202038945]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 202036767 202039399 ZNF274 GTRD no Cervix (HeLa-S3) 21366411
chr1 202038689 202039505 ZNF143 GTRD no Epithelial (MCF-7) 21366424
chr1 202038836 202039438 ZNF274 GTRD no Bone Marrow (K562) 21366425
chr1 202038846 202039146 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21366426
chr1 202038869 202039066 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21366427
chr1 202038902 202039034 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21366428
chr1 202038929 202038948 RFX2 JASPAR yes 34549285
chr1 202038933 202038949 RFX3 JASPAR yes 34549286
chr1 202038933 202038949 RFX4 JASPAR yes 34549287
chr1 202038933 202038949 RFX5 JASPAR yes 34549288
chr1 202038934 202038953 RFX2 JASPAR yes 34549289
chr1 202038936 202038951 RFX5 JASPAR yes 34549290
chr1 202038944 202038958 TLX1 JASPAR yes 34549291
Genes associated with rs9427727[chr1:202038945], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More