EnhancerDB
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  3. rs9728289[chr1:28666536]
Enhancers that have rs9728289[chr1:28666536]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 28664885 28683047 enh11681
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Placenta Colon (HCT116) Lung (PC-9) Pancreas (Panc1) Muscle (Myotube) Stomach
Transcript factors that have rs9728289[chr1:28666536]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 28666519 28666540 IRF1 JASPAR yes 27760012
chr1 28666521 28666542 IRF1 JASPAR yes 27760014
chr1 28666522 28666537 FOXP1 JASPAR yes 27760015
Genes associated with rs9728289[chr1:28666536], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 28696114 28826881 + PHACTR4 ENSG00000204138.8 28696114 29578 Esophagus 3.71323e-11 412
chr1 28696114 28826881 + PHACTR4 ENSG00000204138.8 28696114 29578 Breast 2.33198e-07 412
chr1 28696114 28826881 + PHACTR4 ENSG00000204138.8 28696114 29578 Uterus 0.0306533 412