EnhancerDB
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  3. rs98229[chr17:75366620]
Enhancers that have rs98229[chr17:75366620]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 75332780 75369235 enh17400
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs98229[chr17:75366620]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 75359244 75367231 AR GTRD no Prostate (PC-3) 21790233
chr17 75359244 75367231 AR GTRD no Prostate (PC-3) 108298469
chr17 75359244 75367231 AR GTRD no Prostate (PC-3) 108298470
chr17 75366607 75366620 NFKB1 JASPAR yes 56073975
chr17 75366607 75366620 NFKB2 JASPAR yes 56073976
Genes associated with rs98229[chr17:75366620], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr17 76164639 76169608 + SYNGR2 ENSG00000108639.3 76164639 798019 Uterus 0.21267 16304