EnhancerDB
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  3. rs9894518[chr17:53513153]
Enhancers that have rs9894518[chr17:53513153]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs9894518[chr17:53513153]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53512817 53513157 ZNF143 GTRD no Epithelial (MCF-7) 21772604
chr17 53513143 53513156 SMAD2 JASPAR yes 54850220
chr17 53513145 53513156 E2F4 JASPAR yes 54850221
chr17 53513145 53513156 E2F6 JASPAR yes 54850222
chr17 53513145 53513159 E2F7 JASPAR yes 54850223
chr17 53513146 53513157 E2F1 JASPAR yes 54850224
Genes associated with rs9894518[chr17:53513153], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More