EnhancerDB
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  3. rs9896379[chr17:55740154]
Enhancers that have rs9896379[chr17:55740154]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55736279 55747115 enh4495
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Kidney Epithelial (MCF-7) Stomach Ovary Bone (Osteoblast) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs9896379[chr17:55740154]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 55739946 55740602 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21773665
chr17 55739946 55740602 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108274280
chr17 55739948 55740468 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108274281
chr17 55740018 55740374 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108274282
chr17 55740037 55740561 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21773666
chr17 55740037 55740561 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108274283
chr17 55740055 55740379 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108274284
chr17 55740134 55740578 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108274285
chr17 55740136 55740624 ZNF263 UCSC Txn Factor no Conserved 108274286
chr17 55740144 55740154 ID4 JASPAR yes 54980745
chr17 55740144 55740154 TCF3 JASPAR yes 54980746
chr17 55740144 55740154 TCF4 JASPAR yes 54980747
chr17 55740145 55740154 SNAI2 JASPAR yes 54980748
chr17 55740148 55740458 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108274287
Genes associated with rs9896379[chr17:55740154], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More