EnhancerDB
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  3. rs9904020[chr17:80458960]
Enhancers that have rs9904020[chr17:80458960]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 80448407 80467804 enh4648
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs9904020[chr17:80458960]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 80457549 80459290 TCF7L2 GTRD no Colon (HCT116) 21800673
chr17 80458385 80459140 ZNF143 GTRD no Epithelial (MCF-7) 21800676
chr17 80458720 80459409 TCF7L2 GTRD no Colon (HCT116) 21800677
chr17 80458949 80458968 REST JASPAR yes 56368313
chr17 80458954 80458964 SP1 JASPAR yes 56368314
chr17 80458954 80458973 PAX5 JASPAR yes 56368315
chr17 80458957 80458962 SP1 TRANSFAC yes 56368316
Genes associated with rs9904020[chr17:80458960], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More