EnhancerDB
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  3. SNRNP40[ENSG00000060688.8]
Enhancers that regulate SNRNP40[ENSG00000060688.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 31686925 31693921 enh42924 31769662 75741
Ovary Large Intestine Pancreas Muscle (Myotube) Heart
chr1 31695105 31699255 enh49701 31769662 70407
Large Intestine
chr1 31699945 31704115 enh78995 31769662 65547
Prostate (PC-3) Epithelial (MCF-7)
chr1 31726905 31731055 enh194 31769662 38607
Blood (Karpas-422)
chr1 31737918 31737951 vista1069 31769662 31711
VISTA
chr1 31744566 31748792 enh89474 31769662 20870
Prostate (RWPE1)
chr1 31770743 31770927 vista1070 31769662 1081
VISTA
chr1 31772172 31772177 vista1071 31769662 2510
VISTA
chr1 31777082 31781475 enh26609 31769662 7420
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Muscle (Myoblast) Muscle (Myotube)
chr1 31797465 31801615 enh74181 31769662 27803
Muscle (A673)
chr1 31804725 31808875 enh195 31769662 35063
Blood (Karpas-422)
chr1 31825225 31829375 enh101102 31769662 55563
Thyroid
chr1 31840025 31844175 enh98441 31769662 70363
Uterus
chr1 31844365 31848675 enh26610 31769662 74703
Astrocyte Large Intestine
chr1 31860847 31875520 enh11712 31769662 91185
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Astrocyte Bone (Osteoblast) Placenta Lung (PC-9) Pancreas Thymus Epithelial (MCF-7)
Transcript facotrs that regulate SNRNP40[ENSG00000060688.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 31767992 31771033 ZNF274 GTRD no Bone Marrow (K562) 31769662 1371 107802725
chr1 31770785 31770797 PKNOX1 JASPAR yes 31769662 1123 118266385
chr1 31770785 31770797 TGIF1 JASPAR yes 31769662 1123 118266386
chr1 31770785 31770797 TGIF2 JASPAR yes 31769662 1123 118266387
chr1 31770792 31770796 ESR1 TRANSFAC yes 31769662 1130 118266388
chr1 31770804 31770814 TEAD4 JASPAR yes 31769662 1142 118266389
chr1 31770817 31770832 MEF2A JASPAR yes 31769662 1155 118266390
chr1 31770818 31770833 MEF2C JASPAR yes 31769662 1156 118266391
chr1 31770821 31770825 YY1 TRANSFAC yes 31769662 1159 118266392
chr1 31770858 31770873 ZIC3 JASPAR yes 31769662 1196 118266393
chr1 31770858 31770873 ZIC4 JASPAR yes 31769662 1196 118266394
chr1 31770859 31770873 ZIC1 JASPAR yes 31769662 1197 118266395
chr1 31770864 31770884 RREB1 JASPAR yes 31769662 1202 118266396
chr1 31770865 31770885 RREB1 JASPAR yes 31769662 1203 118266397
chr1 31770866 31770887 ZNF263 JASPAR yes 31769662 1204 118266398
chr1 31770875 31770885 SP1 JASPAR yes 31769662 1213 118266399
chr1 31770876 31770883 CEBPA TRANSFAC yes 31769662 1214 118266400
chr1 31770887 31770895 RHOXF1 JASPAR yes 31769662 1225 118266401
chr1 31770888 31770903 TFAP2C JASPAR yes 31769662 1226 118266402
chr1 31770890 31770905 TFAP2A JASPAR yes 31769662 1228 118266403
chr1 31770891 31770902 TFAP2A JASPAR yes 31769662 1229 118266404
chr1 31770891 31770902 TFAP2B JASPAR yes 31769662 1229 118266405
chr1 31770891 31770902 TFAP2C JASPAR yes 31769662 1229 118266406
chr1 31770904 31770914 TBX21 JASPAR yes 31769662 1242 118266407
chr1 31770904 31770915 TBX20 JASPAR yes 31769662 1242 118266408
chr1 31770904 31770915 TBX2 JASPAR yes 31769662 1242 118266409
chr1 31770904 31770917 EOMES JASPAR yes 31769662 1242 118266410
chr1 31770905 31770913 MGA JASPAR yes 31769662 1243 118266411
chr1 31770905 31770915 TBR1 JASPAR yes 31769662 1243 118266412
chr1 31771422 31773298 ZNF274 GTRD no Blood (GM12878) 31769662 1760 107802726
SNPs associated with SNRNP40[ENSG00000060688.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 31780210 rs16834362 T G 10548 Esophagus 0.00896006 210872
chr1 32591501 rs397775792 A ATT 821839 Heart 0.222995 216996
chr1 31318922 rs2506963 T C 413495 Pancreas 0.090828 206926
chr1 31331466 rs36122893 C G 400951 Breast 0.2776 207129
chr1 32012826 rs4245635 C T 243164 Spleen 0.230953 213088
chr1 31071431 rs143447813 C A 660986 Ovary 0.134472 204172
chr1 31071431 rs143447813 C A 660986 Uterus 0.233401 204172
chr1 31692035 rs12755429 T C 40382 Thyroid 0.221019 210332
Details of SNRNP40[ENSG00000060688.8]
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Genomic Location chr1:31732417-31769662[-]
TSS 31769662
Gene Name SNRNP40
Ensembl ID ENSG00000060688.8
ENTREZID 9410
Uniprot
Q96DI7
A0MNP2
Protein Name
Putative uncharacterized protein DKFZp434D199
U5 small nuclear ribonucleoprotein 40 kDa protein
Expression levels of SNRNP40[ENSG00000060688.8]
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