EnhancerDB
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Enhancers that regulate CHRD[ENSG00000090539.11]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr3 184057655 184062155 enh90216 184097861 35706
Prostate (RWPE1)
chr3 184078263 184078665 vista43438 184097861 19196
VISTA
chr3 184089326 184093652 enh45582 184097861 4209
Muscle (Myotube)
chr3 184131045 184138049 enh45583 184097861 33184
Muscle (Myotube) Liver (HepG2)
chr3 184139485 184149031 enh36210 184097861 41624
Prostate (RWPE1) Astrocyte Peripheral Blood (MM.1S) Muscle (Myoblast) Muscle (Myotube)
chr3 184156025 184163899 enh21157 184097861 58164
Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Epithelial (MCF-7)
chr3 184158085 184158429 vista43439 184097861 60224
VISTA
chr3 184164689 184168915 enh36211 184097861 66828
Cervix (HeLa-S3) Epithelial (MCF-7) Esophagus Astrocyte Lung (PC-9) Stomach
chr3 184175205 184179395 enh36212 184097861 77344
Astrocyte Cervix (HeLa-S3)
chr3 184180985 184186475 enh7732 184097861 83124
Large Intestine Ovary Astrocyte Blood (Karpas-422) Muscle (Myoblast) Muscle (Myotube)
chr3 184188905 184193055 enh105511 184097861 91044
Peripheral Blood (MM.1S)
chr3 184190977 184191077 vista43440 184097861 93116
VISTA
Transcript facotrs that regulate CHRD[ENSG00000090539.11]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr3 184092858 184092869 TFAP2A JASPAR yes 184097861 4992 8203883
chr3 184092858 184092869 TFAP2B JASPAR yes 184097861 4992 8203884
chr3 184092859 184092868 TFAP2A JASPAR yes 184097861 4993 8203885
chr3 184092909 184092923 RORA JASPAR yes 184097861 4938 8203886
chr3 184092910 184092920 RORA JASPAR yes 184097861 4941 8203887
chr3 184092937 184092950 DUXA JASPAR yes 184097861 4911 8203888
chr3 184092948 184092954 TCF4 TRANSFAC yes 184097861 4907 8203889
chr3 184092954 184092958 YY1 TRANSFAC yes 184097861 4903 8203890
chr3 184092967 184092987 TBX19 JASPAR yes 184097861 4874 8203891
chr3 184092969 184092985 T JASPAR yes 184097861 4876 8203892
chr3 184092975 184092981 SOX10 JASPAR yes 184097861 4880 8203893
chr3 184092988 184092994 ZNF354C JASPAR yes 184097861 4867 8203894
chr3 184093005 184093020 TP53 JASPAR yes 184097861 4841 8203895
chr3 184093017 184093023 NFIC JASPAR yes 184097861 4838 8203896
chr3 184093019 184093023 H1TF2 TRANSFAC yes 184097861 4838 8203897
chr3 184093019 184093023 NFE TRANSFAC yes 184097861 4838 8203898
chr3 184093019 184093023 SRF TRANSFAC yes 184097861 4838 8203899
chr3 184093036 184093054 RARA JASPAR yes 184097861 4807 8203900
chr3 184093042 184093055 NR2F1 JASPAR yes 184097861 4806 8203901
chr3 184093043 184093058 LEF1 JASPAR yes 184097861 4803 8203902
chr3 184093046 184093050 ESR1 TRANSFAC yes 184097861 4811 8203903
chr3 184093068 184093073 H4TF1 TRANSFAC yes 184097861 4788 8203904
chr3 184093078 184093097 REST JASPAR yes 184097861 4764 8203905
chr3 184093129 184093135 YY1 JASPAR yes 184097861 4726 8203906
chr3 184093139 184093144 GATA2 JASPAR yes 184097861 4717 8203907
chr3 184093140 184093146 ZNF354C JASPAR yes 184097861 4715 8203908
chr3 184093149 184093153 NFE TRANSFAC yes 184097861 4708 8203909
chr3 184093168 184093181 DUXA JASPAR yes 184097861 4680 8203910
chr3 184093169 184093180 DUX4 JASPAR yes 184097861 4681 8203911
chr3 184093170 184093175 NFY TRANSFAC yes 184097861 4686 8203912
chr3 184093174 184093194 ESR1 JASPAR yes 184097861 4667 8203913
chr3 184093194 184093204 TBX21 JASPAR yes 184097861 4657 8203914
chr3 184093194 184093205 TBX2 JASPAR yes 184097861 4656 8203915
chr3 184093194 184093207 EOMES JASPAR yes 184097861 4654 8203916
chr3 184093195 184093205 TBR1 JASPAR yes 184097861 4656 8203917
chr3 184093199 184093214 MEF2A JASPAR yes 184097861 4647 8203918
chr3 184093200 184093215 MEF2C JASPAR yes 184097861 4646 8203919
chr3 184093201 184093213 MEF2A JASPAR yes 184097861 4648 8203920
chr3 184093202 184093212 MEF2A JASPAR yes 184097861 4649 8203921
chr3 184093203 184093207 YY1 TRANSFAC yes 184097861 4654 8203922
chr3 184093216 184093228 TEAD1 JASPAR yes 184097861 4633 8203923
chr3 184093230 184093247 BCL6B JASPAR yes 184097861 4614 8203924
chr3 184093239 184093244 ETS2 TRANSFAC yes 184097861 4617 8203925
chr3 184093241 184093262 ZNF263 JASPAR yes 184097861 4599 8203926
chr3 184093271 184093276 ETS2 TRANSFAC yes 184097861 4585 8203927
chr3 184093288 184093294 YY1 JASPAR yes 184097861 4567 8203928
chr3 184093298 184093310 TAL1 JASPAR yes 184097861 4551 8203929
chr3 184093306 184093316 RELA JASPAR yes 184097861 4545 8203930
chr3 184093306 184093316 REL JASPAR yes 184097861 4545 8203931
chr3 184093306 184093317 NFKB1 JASPAR yes 184097861 4544 8203932
chr3 184093309 184093319 NFATC3 JASPAR yes 184097861 4542 8203933
chr3 184093310 184093317 NFATC2 JASPAR yes 184097861 4544 8203934
chr3 184093323 184093338 HNF4A JASPAR yes 184097861 4523 8203935
chr3 184093335 184093349 ZIC1 JASPAR yes 184097861 4512 8203936
chr3 184093349 184093361 PKNOX2 JASPAR yes 184097861 4500 8203937
chr3 184093350 184093359 SNAI2 JASPAR yes 184097861 4502 8203938
chr3 184093350 184093360 FIGLA JASPAR yes 184097861 4501 8203939
chr3 184093350 184093360 ID4 JASPAR yes 184097861 4501 8203940
chr3 184093350 184093360 TCF3 JASPAR yes 184097861 4501 8203941
chr3 184093350 184093360 TCF4 JASPAR yes 184097861 4501 8203942
chr3 184093352 184093361 ZEB1 JASPAR yes 184097861 4500 8203943
chr3 184093378 184093382 LFA1 TRANSFAC yes 184097861 4479 8203944
chr3 184093400 184093405 NFY TRANSFAC yes 184097861 4456 8203945
chr3 184093404 184093409 SP1 TRANSFAC yes 184097861 4452 8203946
chr3 184093405 184093415 ZNF740 JASPAR yes 184097861 4446 8203947
chr3 184093408 184093429 ZNF263 JASPAR yes 184097861 4432 8203948
chr3 184093411 184093432 ZNF263 JASPAR yes 184097861 4429 8203949
chr3 184093476 184093480 NFE TRANSFAC yes 184097861 4381 8203950
chr3 184093476 184093481 GATA1 TRANSFAC yes 184097861 4380 8203951
chr3 184093476 184093482 GATA3 JASPAR yes 184097861 4379 8203952
chr3 184093479 184093489 SMAD3 JASPAR yes 184097861 4372 8203953
chr3 184093499 184093509 GCM2 JASPAR yes 184097861 4352 8203954
chr3 184093521 184093529 OTX2 JASPAR yes 184097861 4332 8203955
chr3 184093541 184093560 CTCF JASPAR yes 184097861 4301 8203956
chr3 184093550 184093555 SP1 TRANSFAC yes 184097861 4306 8203957
chr3 184093552 184093557 TFAP2A TRANSFAC yes 184097861 4304 8203958
chr3 184093552 184093558 MZF1 JASPAR yes 184097861 4303 8203959
chr3 184093564 184093569 ETS2 TRANSFAC yes 184097861 4292 8203960
chr3 184093573 184093587 RORA JASPAR yes 184097861 4274 8203961
chr3 184093579 184093585 ESR1 TRANSFAC yes 184097861 4276 8203962
chr3 184093581 184093585 ESR1 TRANSFAC yes 184097861 4276 8203963
chr3 184093589 184093603 SPI1 JASPAR yes 184097861 4258 8203964
chr3 184093590 184093603 ELF1 JASPAR yes 184097861 4258 8203965
chr3 184093592 184093603 ELF5 JASPAR yes 184097861 4258 8203966
chr3 184093593 184093600 SPIB JASPAR yes 184097861 4261 8203967
chr3 184093593 184093603 ETV6 JASPAR yes 184097861 4258 8203968
chr3 184093593 184093603 GABPA JASPAR yes 184097861 4258 8203969
chr3 184093593 184093604 ELK4 JASPAR yes 184097861 4257 8203970
chr3 184093593 184093604 FLI1 JASPAR yes 184097861 4257 8203971
chr3 184093594 184093602 EHF JASPAR yes 184097861 4259 8203972
chr3 184093595 184093602 SPI1 JASPAR yes 184097861 4259 8203973
chr3 184093608 184093618 GABPA JASPAR yes 184097861 4243 8203974
chr3 184093644 184093649 GATA2 JASPAR yes 184097861 4212 8203975
SNPs associated with CHRD[ENSG00000090539.11], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr3 183174933 rs116008160 C G 922928 Esophagus 0.151172 7244488
chr3 184099050 rs34095724 C T 0 Esophagus 0.0942442 7248103
chr3 183338997 rs9828993 A T 758864 Heart 0.37185 7245941
chr3 184058144 rs2889404 C T 39717 Pancreas 0.124791 7247952
chr3 184804337 rs12696542 C G 695813 Ovary 0.387275 7252804
chr3 184494093 rs749124 G C 385569 Uterus 0.301512 7251700
chr3 184312789 rs555975823 G A 204265 Lung 0.193748 7249801
chr3 185085584 rs6790080 A G 977060 Adrenal 0.425537 7254110
Details of CHRD[ENSG00000090539.11]
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Genomic Location chr3:184097861-184108524[+]
TSS 184097861
Gene Name CHRD
Ensembl ID ENSG00000090539.11
ENTREZID 8646
Uniprot
Q9H2X0
Q8N2W7
E7ESX1
Protein Name
Chordin
Expression levels of CHRD[ENSG00000090539.11]
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