EnhancerDB
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Enhancers that regulate LGI1[ENSG00000108231.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr10 95475202 95475401 vista8370 95517566 42165
VISTA
chr10 95499185 95511435 enh13413 95517566 6131
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Stomach Placenta Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
chr10 95513454 95513618 vista8371 95517566 3948
VISTA
chr10 95520329 95520724 vista8372 95517566 2763
VISTA
chr10 95570505 95578276 enh50555 95517566 52939
Colon (HCT116) Brain (SK-N-SH) Large Intestine
chr10 95576027 95576245 vista8373 95517566 58461
VISTA
chr10 95578385 95583395 enh50556 95517566 60819
Large Intestine
chr10 95584285 95588435 enh103388 95517566 66719
Peripheral Blood (MM.1S)
chr10 95593545 95600255 enh50557 95517566 75979
Pancreas Large Intestine
chr10 95607472 95618715 enh50558 95517566 89906
Pancreas Peripheral Blood (MM.1S) Neural Stem Cells (H9) Large Intestine
Transcript facotrs that regulate LGI1[ENSG00000108231.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr10 95512919 95513631 ZNF274 GTRD no Liver (HepG2) 95517566 3935 107932152
chr10 95512931 95513963 ZNF274 GTRD no Liver (HepG2) 95517566 3603 107932153
chr10 95513033 95513634 ZNF274 GTRD no Liver (HepG2) 95517566 3932 107932154
chr10 95513050 95513802 ZNF274 GTRD no Liver (HepG2) 95517566 3764 107932155
chr10 95513063 95513586 ZNF274 GTRD no Liver (HepG2) 95517566 3980 107932156
chr10 95513066 95513633 ZNF274 GTRD no Liver (HepG2) 95517566 3933 107932157
chr10 95513068 95513655 ZNF274 GTRD no Liver (HepG2) 95517566 3911 107932158
chr10 95513082 95513496 ZNF143 GTRD no Epithelial (MCF-7) 95517566 4070 107932159
chr10 95513139 95513508 ZNF143 GTRD no Epithelial (MCF-7) 95517566 4058 107932160
chr10 95513171 95513730 ZNF274 GTRD no Liver (HepG2) 95517566 3836 107932161
chr10 95513173 95513511 ZNF274 GTRD no Liver (HepG2) 95517566 4055 107932162
chr10 95513178 95513702 ZNF143 GTRD no Epithelial (MCF-7) 95517566 3864 107932163
chr10 95513180 95513794 ZNF274 GTRD no Liver (HepG2) 95517566 3772 107932164
chr10 95513201 95513683 ZNF274 GTRD no Liver (HepG2) 95517566 3883 107932165
chr10 95513268 95513464 ZNF274 GTRD no Bone Marrow (K562) 95517566 4102 107932166
chr10 95513287 95513582 SOX2 GTRD no Neural Stem Cells (H9) 95517566 3984 107932167
chr10 95513328 95513674 ZNF143 GTRD no Epithelial (MCF-7) 95517566 3892 107932168
chr10 95513386 95513656 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 95517566 3910 107932169
chr10 95513422 95513706 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 95517566 3860 107932170
chr10 95513486 95513506 TP63 JASPAR yes 95517566 4060 21136479
chr10 95513506 95514102 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 95517566 3464 107932171
chr10 95513526 95513541 FOXP1 JASPAR yes 95517566 4025 21136480
chr10 95513527 95513536 SRY JASPAR yes 95517566 4030 21136481
chr10 95513527 95513538 FOXP2 JASPAR yes 95517566 4028 21136482
chr10 95513527 95513539 FOXC2 JASPAR yes 95517566 4027 21136483
chr10 95513527 95513541 FOXF2 JASPAR yes 95517566 4025 21136484
chr10 95513528 95513536 FOXD1 JASPAR yes 95517566 4030 21136485
chr10 95513528 95513536 FOXG1 JASPAR yes 95517566 4030 21136486
chr10 95513528 95513536 FOXO3 JASPAR yes 95517566 4030 21136487
chr10 95513528 95513539 FOXC1 JASPAR yes 95517566 4027 21136488
chr10 95513529 95513536 FOXD2 JASPAR yes 95517566 4030 21136489
chr10 95513529 95513536 FOXI1 JASPAR yes 95517566 4030 21136490
chr10 95513529 95513536 FOXL1 JASPAR yes 95517566 4030 21136491
chr10 95513529 95513536 FOXO4 JASPAR yes 95517566 4030 21136492
chr10 95513529 95513536 FOXO6 JASPAR yes 95517566 4030 21136493
chr10 95513529 95513536 FOXP3 JASPAR yes 95517566 4030 21136494
chr10 95513529 95513540 FOXA1 JASPAR yes 95517566 4026 21136495
chr10 95513549 95513568 RFX2 JASPAR yes 95517566 3998 21136496
chr10 95513563 95513578 TFAP2A JASPAR yes 95517566 3988 21136497
chr10 95513563 95513578 TFAP2C JASPAR yes 95517566 3988 21136498
chr10 95513565 95513580 TFAP2C JASPAR yes 95517566 3986 21136499
chr10 95513566 95513577 TFAP2A JASPAR yes 95517566 3989 21136500
chr10 95513566 95513577 TFAP2B JASPAR yes 95517566 3989 21136501
chr10 95513566 95513577 TFAP2C JASPAR yes 95517566 3989 21136502
chr10 95513566 95513578 TFAP2A JASPAR yes 95517566 3988 21136503
chr10 95513566 95513578 TFAP2B JASPAR yes 95517566 3988 21136504
chr10 95513566 95513578 TFAP2C JASPAR yes 95517566 3988 21136505
chr10 95513570 95513580 MZF1 JASPAR yes 95517566 3986 21136506
chr10 95513583 95513591 RHOXF1 JASPAR yes 95517566 3975 21136507
chr10 95513590 95513593 MYB TRANSFAC yes 95517566 3973 21136508
chr10 95513595 95513605 MAX JASPAR yes 95517566 3961 21136509
chr10 95513595 95513607 HES5 JASPAR yes 95517566 3959 21136510
chr10 95513595 95513610 AR JASPAR yes 95517566 3956 21136511
chr10 95513595 95513612 NR3C1 JASPAR yes 95517566 3954 21136512
chr10 95513595 95513612 NR3C2 JASPAR yes 95517566 3954 21136513
chr10 95513597 95513612 AR JASPAR yes 95517566 3954 21136514
chr10 95513607 95513612 ETS2 TRANSFAC yes 95517566 3954 21136515
chr10 95520340 95520350 SREBF2 JASPAR yes 95517566 2774 21136516
chr10 95520346 95520359 POU3F3 JASPAR yes 95517566 2780 21136517
chr10 95520349 95520362 DUXA JASPAR yes 95517566 2783 21136518
chr10 95520350 95520353 MYB TRANSFAC yes 95517566 2784 21136519
chr10 95520350 95520361 DUX4 JASPAR yes 95517566 2784 21136520
chr10 95520350 95520361 PHOX2A JASPAR yes 95517566 2784 21136521
chr10 95520350 95520361 PROP1 JASPAR yes 95517566 2784 21136522
chr10 95520352 95520366 ONECUT1 JASPAR yes 95517566 2786 21136523
chr10 95520355 95520365 CUX1 JASPAR yes 95517566 2789 21136524
chr10 95520355 95520365 CUX2 JASPAR yes 95517566 2789 21136525
chr10 95520355 95520365 PAX3 JASPAR yes 95517566 2789 21136526
chr10 95520355 95520365 PAX7 JASPAR yes 95517566 2789 21136527
chr10 95520357 95520367 EN2 JASPAR yes 95517566 2791 21136528
chr10 95520357 95520367 ESX1 JASPAR yes 95517566 2791 21136529
chr10 95520373 95520393 RREB1 JASPAR yes 95517566 2807 21136530
chr10 95520375 95520395 RREB1 JASPAR yes 95517566 2809 21136531
chr10 95520376 95520382 LEF1 TRANSFAC yes 95517566 2810 21136532
chr10 95520376 95520382 SOX10 JASPAR yes 95517566 2810 21136533
chr10 95520376 95520391 FOXP1 JASPAR yes 95517566 2810 21136534
chr10 95520382 95520388 TCF4 TRANSFAC yes 95517566 2816 21136535
chr10 95520428 95520443 MEF2C JASPAR yes 95517566 2862 21136536
chr10 95520429 95520444 MEF2A JASPAR yes 95517566 2863 21136537
chr10 95520436 95520446 HMBOX1 JASPAR yes 95517566 2870 21136538
chr10 95520459 95520470 PHOX2A JASPAR yes 95517566 2893 21136539
chr10 95520459 95520470 PROP1 JASPAR yes 95517566 2893 21136540
chr10 95520465 95520470 H4TF1 TRANSFAC yes 95517566 2899 21136541
chr10 95520474 95520478 YY1 TRANSFAC yes 95517566 2908 21136542
chr10 95520490 95520495 ETS2 TRANSFAC yes 95517566 2924 21136543
chr10 95520506 95520521 MEF2C JASPAR yes 95517566 2940 21136544
chr10 95520507 95520522 MEF2A JASPAR yes 95517566 2941 21136545
chr10 95520508 95520520 MEF2A JASPAR yes 95517566 2942 21136546
chr10 95520509 95520519 MEF2A JASPAR yes 95517566 2943 21136547
chr10 95520533 95520550 RXRA JASPAR yes 95517566 2967 21136548
chr10 95520556 95520571 RFX5 JASPAR yes 95517566 2990 21136549
chr10 95520563 95520576 HSF1 JASPAR yes 95517566 2997 21136550
chr10 95520567 95520582 HSF1 JASPAR yes 95517566 3001 21136551
chr10 95520568 95520581 HSF1 JASPAR yes 95517566 3002 21136552
chr10 95520568 95520581 HSF2 JASPAR yes 95517566 3002 21136553
chr10 95520568 95520581 HSF4 JASPAR yes 95517566 3002 21136554
chr10 95520569 95520579 TEAD1 JASPAR yes 95517566 3003 21136555
chr10 95520569 95520579 TEAD4 JASPAR yes 95517566 3003 21136556
chr10 95520569 95520581 TEAD1 JASPAR yes 95517566 3003 21136557
chr10 95520570 95520578 TEAD3 JASPAR yes 95517566 3004 21136558
chr10 95520583 95520587 YY1 TRANSFAC yes 95517566 3017 21136559
chr10 95520603 95520618 MEF2C JASPAR yes 95517566 3037 21136560
chr10 95520604 95520619 MEF2A JASPAR yes 95517566 3038 21136561
chr10 95520613 95520616 MYB TRANSFAC yes 95517566 3047 21136562
chr10 95520635 95520650 AR JASPAR yes 95517566 3069 21136563
chr10 95520653 95520656 MYB TRANSFAC yes 95517566 3087 21136564
chr10 95520655 95520671 NFYA JASPAR yes 95517566 3089 21136565
chr10 95520660 95520665 NFY TRANSFAC yes 95517566 3094 21136566
chr10 95520667 95520670 MYB TRANSFAC yes 95517566 3101 21136567
chr10 95520673 95520685 YY1 JASPAR yes 95517566 3107 21136568
chr10 95520702 95520714 POU2F1 JASPAR yes 95517566 3136 21136569
chr10 95520702 95520715 POU3F3 JASPAR yes 95517566 3136 21136570
chr10 95520702 95520716 POU1F1 JASPAR yes 95517566 3136 21136571
chr10 95520703 95520715 POU3F1 JASPAR yes 95517566 3137 21136572
chr10 95520703 95520715 POU3F2 JASPAR yes 95517566 3137 21136573
chr10 95520703 95520716 POU2F2 JASPAR yes 95517566 3137 21136574
chr10 95520704 95520713 POU3F4 JASPAR yes 95517566 3138 21136575
chr10 95520704 95520713 POU5F1B JASPAR yes 95517566 3138 21136576
SNPs associated with LGI1[ENSG00000108231.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr10 94957199 rs7072517 G T 560367 Esophagus 0.172198 1584991
chr10 95535240 rs10882332 C A 0 Liver 0.00544676 1588255
Details of LGI1[ENSG00000108231.7]
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Genomic Location chr10:95517566-95557916[+]
TSS 95517566
Gene Name LGI1
Ensembl ID ENSG00000108231.7
ENTREZID 9211
Uniprot
A0A0S2Z5G1
A0A1B0GUD3
A0A0S2Z4S7
O95970
A0A0S2Z4X3
Protein Name
Leucine-rich glioma inactivated 1 isoform 1
Leucine-rich glioma inactivated 1 isoform 3
Leucine-rich glioma inactivated 1 isoform 4
Leucine-rich glioma inactivated 1 isoform 5
Leucine-rich glioma-inactivated protein 1
Expression levels of LGI1[ENSG00000108231.7]
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