EnhancerDB
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Enhancers that regulate HMGCL[ENSG00000117305.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 24093326 24097923 enh64009 24165110 67187
Heart
chr1 24114539 24122931 enh102370 24165110 42179
Bone (Osteoblast)
chr1 24154645 24159095 enh90658 24165110 6015
Bone Marrow (K562) Stomach Lung (PC-9)
chr1 24212025 24217968 enh129 24165110 46915
Blood (OCI-LY7) Blood (Karpas-422) Blood (GM12878)
chr1 24220965 24239635 enh130 24165110 55855
Bone Marrow (K562) Prostate (PC-3) Brain (SK-N-SH) Brain (SK-N-MC) Blood (T-cell) Blood (OCI-LY7) Blood (GM12878) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Thymus Stomach
chr1 24229023 24229388 vista759 24165110 63913
VISTA
chr1 24235925 24236209 vista760 24165110 70815
VISTA
chr1 24237439 24237588 vista761 24165110 72329
VISTA
chr1 24240105 24252965 enh42908 24165110 74995
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Blood (OCI-LY7) Stomach Colon (HCT116) Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Muscle (Myotube) Uterus Heart
chr1 24254862 24262655 enh131 24165110 89752
Prostate (RWPE1) Blood (OCI-LY7) Muscle (A673) Placenta Blood (Karpas-422)
Transcript facotrs that regulate HMGCL[ENSG00000117305.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with HMGCL[ENSG00000117305.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 23186129 rs6675629 A T 942246 Esophagus 0.0598376 155474
chr1 24129126 rs2076343 A G 0 Heart 2.44838e-10 161525
chr1 25106997 rs183950836 C G 941887 Spleen 0.0379031 168121
chr1 24127864 rs12031592 A C,T 511 Ovary 0.0274757 161524
chr1 23895154 rs877518 G A 233221 Uterus 0.351967 159602
chr1 23823798 rs1009590 G C,T 304577 Liver 0.183642 159046
chr1 24715222 rs72880663 A G 550112 Stomach 0.541587 165271
Details of HMGCL[ENSG00000117305.10]
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Genomic Location chr1:24128375-24165110[-]
TSS 24165110
Gene Name HMGCL
Ensembl ID ENSG00000117305.10
ENTREZID 3155
Uniprot
P35914
Protein Name
mitochondrial
transcript variant 1
3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase
Alternative protein HMGCL
Hydroxymethylglutaryl-CoA lyase
Mutant 3-hydroxymethyl-3-methylglutaryl-CoA lyase
Expression levels of HMGCL[ENSG00000117305.10]
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