EnhancerDB
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Enhancers that regulate SYF2[ENSG00000117614.5]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 25459605 25469155 enh47153 25558993 89838
Liver (HepG2) Large Intestine Blood (GM12878) Muscle (A673) Thymus
chr1 25466725 25467101 vista829 25558993 91892
VISTA
chr1 25491085 25497195 enh49687 25558993 61798
Prostate (PC-3) Brain (SK-N-MC) Large Intestine Pancreas Stomach
chr1 25498445 25503735 enh92036 25558993 55258
Thyroid Liver (HepG2)
chr1 25517785 25533515 enh42911 25558993 25478
Liver (HepG2) Brain (SK-N-MC) Large Intestine Esophagus Bone (Osteoblast) Muscle (A673) Breast Pancreas Muscle (Myotube) Thymus Stomach
chr1 25528711 25528727 vista830 25558993 30266
VISTA
chr1 25537325 25548015 enh150 25558993 10978
Placenta Liver (HepG2) Blood (Karpas-422)
chr1 25559638 25560067 vista831 25558993 645
VISTA
chr1 25560905 25571595 enh151 25558993 1912
Bone Marrow (K562) Blood (Karpas-422)
chr1 25566195 25566411 vista832 25558993 7202
VISTA
chr1 25566618 25566670 vista833 25558993 7625
VISTA
chr1 25574705 25578855 enh11628 25558993 15712
Placenta
chr1 25584365 25588755 enh78982 25558993 25372
Prostate (PC-3)
chr1 25605605 25610515 enh152 25558993 46612
Blood (Karpas-422)
chr1 25617985 25622575 enh153 25558993 58992
Blood (Karpas-422)
Transcript facotrs that regulate SYF2[ENSG00000117614.5]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 25558401 25560195 POLR2A UCSC Txn Factor no Conserved 25558993 592 107802500
chr1 25559643 25559647 YY1 TRANSFAC yes 25558993 650 118253492
chr1 25559652 25559666 SPIC JASPAR yes 25558993 659 118253493
chr1 25559653 25559667 IRF7 JASPAR yes 25558993 660 118253494
chr1 25559653 25559667 IRF8 JASPAR yes 25558993 660 118253495
chr1 25559672 25559675 MYB TRANSFAC yes 25558993 679 118253496
chr1 25559678 25559688 SP1 JASPAR yes 25558993 685 118253497
chr1 25559690 25559703 NR2F1 JASPAR yes 25558993 697 118253498
chr1 25559694 25559708 RXRB JASPAR yes 25558993 701 118253499
chr1 25559694 25559708 RXRG JASPAR yes 25558993 701 118253500
chr1 25559712 25559733 ZNF263 JASPAR yes 25558993 719 118253501
chr1 25559718 25559722 NFE TRANSFAC yes 25558993 725 118253502
chr1 25559726 25559736 SP1 JASPAR yes 25558993 733 118253503
chr1 25559726 25559745 CTCF JASPAR yes 25558993 733 118253504
chr1 25559739 25559744 SP1 TRANSFAC yes 25558993 746 118253505
chr1 25559745 25559757 NHLH1 JASPAR yes 25558993 752 118253506
chr1 25559746 25559756 MSC JASPAR yes 25558993 753 118253507
chr1 25559746 25559756 NHLH1 JASPAR yes 25558993 753 118253508
chr1 25559746 25559756 TFAP4 JASPAR yes 25558993 753 118253509
chr1 25559747 25559760 SCRT2 JASPAR yes 25558993 754 118253510
chr1 25559778 25559791 DUXA JASPAR yes 25558993 785 118253511
chr1 25559779 25559790 DUX4 JASPAR yes 25558993 786 118253512
chr1 25559787 25559802 NFYB JASPAR yes 25558993 794 118253513
chr1 25559789 25559805 NFYA JASPAR yes 25558993 796 118253514
chr1 25559790 25559808 NFYA JASPAR yes 25558993 797 118253515
chr1 25559791 25559811 RREB1 JASPAR yes 25558993 798 118253516
chr1 25559793 25559808 MAFK JASPAR yes 25558993 800 118253517
chr1 25559794 25559798 H1TF2 TRANSFAC yes 25558993 801 118253518
chr1 25559794 25559798 NFE TRANSFAC yes 25558993 801 118253519
chr1 25559794 25559798 SRF TRANSFAC yes 25558993 801 118253520
chr1 25559821 25559831 SP1 JASPAR yes 25558993 828 118253521
chr1 25559823 25559832 THAP1 JASPAR yes 25558993 830 118253522
chr1 25559850 25559853 MYB TRANSFAC yes 25558993 857 118253523
chr1 25559850 25559864 NR2F1 JASPAR yes 25558993 857 118253524
chr1 25559850 25559864 RXRG JASPAR yes 25558993 857 118253525
chr1 25559850 25559865 NR2C2 JASPAR yes 25558993 857 118253526
chr1 25559856 25559866 SREBF2 JASPAR yes 25558993 863 118253527
chr1 25559891 25559894 MYB TRANSFAC yes 25558993 898 118253528
chr1 25559898 25559913 TFAP2A JASPAR yes 25558993 905 118253529
chr1 25559898 25559913 TFAP2C JASPAR yes 25558993 905 118253530
chr1 25559900 25559915 TFAP2A JASPAR yes 25558993 907 118253531
chr1 25559900 25559915 TFAP2C JASPAR yes 25558993 907 118253532
chr1 25559901 25559912 TFAP2A JASPAR yes 25558993 908 118253533
chr1 25559907 25559924 RARA JASPAR yes 25558993 914 118253534
chr1 25560011 25560026 HNF4G JASPAR yes 25558993 1018 118253535
chr1 25560013 25560023 NFATC3 JASPAR yes 25558993 1020 118253536
chr1 25560023 25560033 NFATC3 JASPAR yes 25558993 1030 118253537
chr1 25560029 25560033 YY1 TRANSFAC yes 25558993 1036 118253538
chr1 25560046 25560058 IRF1 JASPAR yes 25558993 1053 118253539
chr1 25563578 25563584 MAZ TRANSFAC yes 25558993 4585 27571034
chr1 25563613 25563618 SP1 TRANSFAC yes 25558993 4620 27571035
chr1 25563613 25563625 HINFP JASPAR yes 25558993 4620 27571036
chr1 25563618 25563635 ESR1 JASPAR yes 25558993 4625 27571037
chr1 25563628 25563635 JUN TRANSFAC yes 25558993 4635 27571038
chr1 25563636 25563642 YY1 JASPAR yes 25558993 4643 27571039
chr1 25563636 25563648 E2F1 JASPAR yes 25558993 4643 27571040
chr1 25563679 25563694 MEF2C JASPAR yes 25558993 4686 27571041
chr1 25563680 25563695 MEF2A JASPAR yes 25558993 4687 27571042
chr1 25563681 25563693 MEF2A JASPAR yes 25558993 4688 27571043
chr1 25563681 25563693 MEF2D JASPAR yes 25558993 4688 27571044
chr1 25563684 25563696 IRF1 JASPAR yes 25558993 4691 27571045
chr1 25563686 25563706 RREB1 JASPAR yes 25558993 4693 27571046
chr1 25563688 25563703 FOXP1 JASPAR yes 25558993 4695 27571047
chr1 25563689 25563700 FOXA1 JASPAR yes 25558993 4696 27571048
chr1 25563689 25563704 FOXA1 JASPAR yes 25558993 4696 27571049
chr1 25563690 25563702 FOXC2 JASPAR yes 25558993 4697 27571050
chr1 25563690 25563710 RREB1 JASPAR yes 25558993 4697 27571051
chr1 25563691 25563703 FOXI1 JASPAR yes 25558993 4698 27571052
chr1 25563691 25563711 RREB1 JASPAR yes 25558993 4698 27571053
chr1 25563692 25563707 FOXP1 JASPAR yes 25558993 4699 27571054
chr1 25563694 25563714 RREB1 JASPAR yes 25558993 4701 27571055
chr1 25563695 25563707 FOXI1 JASPAR yes 25558993 4702 27571056
chr1 25563695 25563715 RREB1 JASPAR yes 25558993 4702 27571057
chr1 25563698 25563719 IRF1 JASPAR yes 25558993 4705 27571058
chr1 25563700 25563715 IRF9 JASPAR yes 25558993 4707 27571059
chr1 25563702 25563717 STAT2 JASPAR yes 25558993 4709 27571060
chr1 25563722 25563733 DMRT3 JASPAR yes 25558993 4729 27571061
chr1 25563729 25563733 YY1 TRANSFAC yes 25558993 4736 27571062
chr1 25563747 25563750 MYB TRANSFAC yes 25558993 4754 27571063
chr1 25563786 25563797 PROP1 JASPAR yes 25558993 4793 27571064
chr1 25563787 25563791 YY1 TRANSFAC yes 25558993 4794 27571065
chr1 25563788 25563798 HOXA13 JASPAR yes 25558993 4795 27571066
chr1 25563788 25563798 HOXD13 JASPAR yes 25558993 4795 27571067
chr1 25563788 25563799 HOXA10 JASPAR yes 25558993 4795 27571068
chr1 25563788 25563803 MEF2A JASPAR yes 25558993 4795 27571069
chr1 25563789 25563798 CDX1 JASPAR yes 25558993 4796 27571070
chr1 25563789 25563800 CDX2 JASPAR yes 25558993 4796 27571071
chr1 25563790 25563802 MEF2A JASPAR yes 25558993 4797 27571072
chr1 25563790 25563802 MEF2B JASPAR yes 25558993 4797 27571073
chr1 25563790 25563802 MEF2D JASPAR yes 25558993 4797 27571074
chr1 25563850 25563855 MYC TRANSFAC yes 25558993 4857 27571075
chr1 25563859 25563876 ZNF410 JASPAR yes 25558993 4866 27571076
chr1 25563904 25563916 PROX1 JASPAR yes 25558993 4911 27571077
chr1 25563911 25563922 RUNX1 JASPAR yes 25558993 4918 27571078
chr1 25563912 25563922 RUNX3 JASPAR yes 25558993 4919 27571079
chr1 25563913 25563922 RUNX2 JASPAR yes 25558993 4920 27571080
chr1 25563941 25563946 SP1 TRANSFAC yes 25558993 4948 27571081
chr1 25563945 25563953 TBX5 JASPAR yes 25558993 4952 27571082
chr1 25563945 25563954 ZEB1 JASPAR yes 25558993 4952 27571083
chr1 25563945 25563958 ZBTB18 JASPAR yes 25558993 4952 27571084
chr1 25563946 25563956 ID4 JASPAR yes 25558993 4953 27571085
chr1 25563946 25563956 TCF3 JASPAR yes 25558993 4953 27571086
chr1 25563946 25563956 TCF4 JASPAR yes 25558993 4953 27571087
chr1 25563948 25563953 USF2 TRANSFAC yes 25558993 4955 27571088
chr1 25563952 25563973 REST JASPAR yes 25558993 4959 27571089
chr1 25563953 25563972 REST JASPAR yes 25558993 4960 27571090
chr1 25563972 25563979 SPI1 JASPAR yes 25558993 4979 27571091
chr1 25563972 25563980 EHF JASPAR yes 25558993 4979 27571092
chr1 25563987 25563997 SP1 JASPAR yes 25558993 4994 27571093
chr1 25563988 25563998 SP1 JASPAR yes 25558993 4995 27571094
SNPs associated with SYF2[ENSG00000117614.5], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 25887230 rs71638389 G A 328237 Esophagus 0.000678882 173869
chr1 25982166 rs145620880 T C 423173 Heart 0.0216402 174822
chr1 25429970 rs803322 G C 119200 Heart 0.176089 171488
chr1 25309975 rs148295849 C T 239195 Pancreas 0.341306 170138
chr1 24752573 rs2281184 C A,T 796597 Breast 0.304242 165471
chr1 24806146 rs195736 C T 743024 Spleen 0.374463 165639
chr1 25073394 rs3122050 T C 475776 Ovary 0.16505 167814
chr1 26121555 rs807245 T C 562562 Uterus 0.323578 176075
chr1 26009251 rs150637719 G A 450258 Thyroid 0.241068 175109
chr1 25023923 rs12067856 G C 525247 Stomach 0.27006 167197
chr1 26261366 rs140399583 G A 702373 Adrenal 0.14701 177225
Details of SYF2[ENSG00000117614.5]
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Genomic Location chr1:25549170-25558993[-]
TSS 25558993
Gene Name SYF2
Ensembl ID ENSG00000117614.5
ENTREZID 25949
Uniprot
O95926
Protein Name
Pre-mRNA-splicing factor SYF2
Expression levels of SYF2[ENSG00000117614.5]
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