EnhancerDB
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Enhancers that regulate MSX2[ENSG00000120149.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr5 174033011 174055875 enh22842 174151536 95661
Brain (SK-N-SH) Large Intestine Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Pancreas Epithelial (MCF-7)
chr5 174061165 174066675 enh22843 174151536 84861
Placenta Peripheral Blood (MM.1S) Epithelial (MCF-7)
chr5 174067565 174074195 enh97803 174151536 77341
Epithelial (MCF-7)
chr5 174105445 174110455 enh22844 174151536 41081
Placenta Epithelial (MCF-7)
chr5 174112485 174123215 enh22845 174151536 28321
Placenta Large Intestine Epithelial (MCF-7)
chr5 174124305 174128455 enh97804 174151536 23081
Epithelial (MCF-7)
chr5 174148035 174148467 vista50271 174151536 3069
VISTA
chr5 174153587 174153702 vista50272 174151536 2051
VISTA
chr5 174159085 174167086 enh38681 174151536 7549
Brain (SK-N-MC) Astrocyte Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube)
chr5 174160174 174161834 vista1404 174151536 8638
VISTA
chr5 174176104 174181300 enh46030 174151536 24568
Muscle (Myotube)
chr5 174194382 174194672 vista50273 174151536 42846
VISTA
chr5 174202205 174206855 enh84044 174151536 50669
Prostate (PC-3) Epithelial (MCF-7)
chr5 174218805 174222955 enh38682 174151536 67269
Astrocyte
chr5 174224185 174228567 enh46031 174151536 72649
Muscle (Myoblast) Muscle (Myotube)
chr5 174250600 174261235 enh38683 174151536 99064
Muscle (Myoblast) Astrocyte Cervix (HeLa-S3) Prostate (RWPE1)
Transcript facotrs that regulate MSX2[ENSG00000120149.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr5 174147997 174148373 TCF7L2 UCSC Txn Factor no Conserved 174151536 3163 108537676
chr5 174148046 174148051 SP1 TRANSFAC yes 174151536 3485 70768462
chr5 174148047 174148061 MTF1 JASPAR yes 174151536 3475 70768463
chr5 174148055 174148064 VENTX JASPAR yes 174151536 3472 70768464
chr5 174148055 174148065 EN2 JASPAR yes 174151536 3471 70768465
chr5 174148055 174148065 ESX1 JASPAR yes 174151536 3471 70768466
chr5 174148055 174148065 GBX1 JASPAR yes 174151536 3471 70768467
chr5 174148055 174148065 GBX2 JASPAR yes 174151536 3471 70768468
chr5 174148055 174148065 GSX2 JASPAR yes 174151536 3471 70768469
chr5 174148055 174148065 HESX1 JASPAR yes 174151536 3471 70768470
chr5 174148055 174148065 HOXB2 JASPAR yes 174151536 3471 70768471
chr5 174148055 174148065 HOXB3 JASPAR yes 174151536 3471 70768472
chr5 174148055 174148065 MEOX2 JASPAR yes 174151536 3471 70768473
chr5 174148055 174148065 MNX1 JASPAR yes 174151536 3471 70768474
chr5 174148055 174148065 RAX JASPAR yes 174151536 3471 70768475
chr5 174148056 174148064 BARX1 JASPAR yes 174151536 3472 70768476
chr5 174148056 174148064 BSX JASPAR yes 174151536 3472 70768477
chr5 174148056 174148064 ISL2 JASPAR yes 174151536 3472 70768478
chr5 174148056 174148064 LMX1B JASPAR yes 174151536 3472 70768479
chr5 174148056 174148064 MSX1 JASPAR yes 174151536 3472 70768480
chr5 174148056 174148064 MSX2 JASPAR yes 174151536 3472 70768481
chr5 174148061 174148064 MYB TRANSFAC yes 174151536 3472 70768482
chr5 174148077 174148088 NRF1 JASPAR yes 174151536 3448 70768483
chr5 174148078 174148082 LFA1 TRANSFAC yes 174151536 3454 70768484
chr5 174148084 174148099 NR2C2 JASPAR yes 174151536 3437 70768485
chr5 174148090 174148096 NFE2 TRANSFAC yes 174151536 3440 70768486
chr5 174148091 174148102 TFAP2A JASPAR yes 174151536 3434 70768487
chr5 174148091 174148102 TFAP2B JASPAR yes 174151536 3434 70768488
chr5 174148091 174148102 TFAP2C JASPAR yes 174151536 3434 70768489
chr5 174148092 174148101 TFAP2A JASPAR yes 174151536 3435 70768490
chr5 174148097 174148101 LFA1 TRANSFAC yes 174151536 3435 70768491
chr5 174148102 174148110 SP1 TRANSFAC yes 174151536 3426 70768492
chr5 174148102 174148110 WT1 TRANSFAC yes 174151536 3426 70768493
chr5 174148104 174148111 SP1 TRANSFAC yes 174151536 3425 70768494
chr5 174148104 174148114 SP1 JASPAR yes 174151536 3422 70768495
chr5 174148105 174148113 SP1 TRANSFAC yes 174151536 3423 70768496
chr5 174148105 174148114 SP1 TRANSFAC yes 174151536 3422 70768497
chr5 174148106 174148111 SP1 TRANSFAC yes 174151536 3425 70768498
chr5 174148107 174148112 SP1 TRANSFAC yes 174151536 3424 70768499
chr5 174148107 174148113 SP1 TRANSFAC yes 174151536 3423 70768500
chr5 174148111 174148115 LFA1 TRANSFAC yes 174151536 3421 70768501
chr5 174148115 174148121 SP1 TRANSFAC yes 174151536 3415 70768502
chr5 174148116 174148121 SP1 TRANSFAC yes 174151536 3415 70768503
chr5 174148117 174148122 SP1 TRANSFAC yes 174151536 3414 70768504
chr5 174148117 174148123 SP1 TRANSFAC yes 174151536 3413 70768505
chr5 174148118 174148126 SP1 TRANSFAC yes 174151536 3410 70768506
chr5 174148118 174148126 WT1 TRANSFAC yes 174151536 3410 70768507
chr5 174148120 174148127 SP1 TRANSFAC yes 174151536 3409 70768508
chr5 174148120 174148130 SP1 JASPAR yes 174151536 3406 70768509
chr5 174148121 174148129 SP1 TRANSFAC yes 174151536 3407 70768510
chr5 174148121 174148130 SP1 TRANSFAC yes 174151536 3406 70768511
chr5 174148122 174148127 SP1 TRANSFAC yes 174151536 3409 70768512
chr5 174148123 174148128 SP1 TRANSFAC yes 174151536 3408 70768513
chr5 174148123 174148129 SP1 TRANSFAC yes 174151536 3407 70768514
chr5 174148150 174148154 ESR1 TRANSFAC yes 174151536 3382 70768515
chr5 174148165 174148175 SP1 JASPAR yes 174151536 3361 70768516
chr5 174148166 174148176 SP1 JASPAR yes 174151536 3360 70768517
chr5 174148181 174148196 LEF1 JASPAR yes 174151536 3340 70768518
chr5 174148182 174148196 TCF7L2 JASPAR yes 174151536 3340 70768519
chr5 174148201 174148212 E2F1 JASPAR yes 174151536 3324 70768520
chr5 174148205 174148216 NRF1 JASPAR yes 174151536 3320 70768521
chr5 174148209 174148218 THAP1 JASPAR yes 174151536 3318 70768522
chr5 174148237 174148258 ZNF263 JASPAR yes 174151536 3278 70768523
chr5 174148245 174148251 NFE2 TRANSFAC yes 174151536 3285 70768524
chr5 174148246 174148267 ZNF263 JASPAR yes 174151536 3269 70768525
chr5 174148248 174148254 SP1 TRANSFAC yes 174151536 3282 70768526
chr5 174148248 174148258 SP1 JASPAR yes 174151536 3278 70768527
chr5 174148251 174148262 E2F4 JASPAR yes 174151536 3274 70768528
chr5 174148253 174148262 SP1 TRANSFAC yes 174151536 3274 70768529
chr5 174148254 174148260 SP1 TRANSFAC yes 174151536 3276 70768530
chr5 174148254 174148264 SP1 JASPAR yes 174151536 3272 70768531
chr5 174148254 174148273 CTCF JASPAR yes 174151536 3263 70768532
chr5 174148255 174148262 SP1 TRANSFAC yes 174151536 3274 70768533
chr5 174148256 174148261 SP1 TRANSFAC yes 174151536 3275 70768534
chr5 174148256 174148262 SP1 TRANSFAC yes 174151536 3274 70768535
chr5 174148256 174148263 SP1 TRANSFAC yes 174151536 3273 70768536
chr5 174148295 174148310 TFAP2A JASPAR yes 174151536 3226 70768537
chr5 174148401 174148406 SP1 TRANSFAC yes 174151536 3130 70768538
chr5 174148408 174148413 SP1 TRANSFAC yes 174151536 3123 70768539
chr5 174148416 174148419 MYB TRANSFAC yes 174151536 3117 70768540
chr5 174148420 174148435 ZIC3 JASPAR yes 174151536 3101 70768541
chr5 174148422 174148431 TFAP2A JASPAR yes 174151536 3105 70768542
chr5 174148426 174148441 ZBTB33 JASPAR yes 174151536 3095 70768543
chr5 174148431 174148442 E2F1 JASPAR yes 174151536 3094 70768544
chr5 174148432 174148443 E2F4 JASPAR yes 174151536 3093 70768545
chr5 174148432 174148443 E2F6 JASPAR yes 174151536 3093 70768546
chr5 174148436 174148441 ETS2 TRANSFAC yes 174151536 3095 70768547
chr5 174153587 174153602 FOXP1 JASPAR yes 174151536 2051 70768548
chr5 174153588 174153603 FOXP1 JASPAR yes 174151536 2052 70768549
chr5 174153588 174153609 IRF1 JASPAR yes 174151536 2052 70768550
chr5 174153589 174153604 FOXP1 JASPAR yes 174151536 2053 70768551
chr5 174153589 174153610 IRF1 JASPAR yes 174151536 2053 70768552
chr5 174153590 174153605 FOXP1 JASPAR yes 174151536 2054 70768553
chr5 174153590 174153611 IRF1 JASPAR yes 174151536 2054 70768554
chr5 174153591 174153606 FOXP1 JASPAR yes 174151536 2055 70768555
chr5 174153591 174153612 IRF1 JASPAR yes 174151536 2055 70768556
chr5 174153592 174153607 FOXP1 JASPAR yes 174151536 2056 70768557
chr5 174153593 174153608 FOXP1 JASPAR yes 174151536 2057 70768558
chr5 174153594 174153609 FOXP1 JASPAR yes 174151536 2058 70768559
chr5 174153594 174153615 IRF1 JASPAR yes 174151536 2058 70768560
chr5 174153595 174153610 FOXP1 JASPAR yes 174151536 2059 70768561
chr5 174153611 174153616 TFAP2A TRANSFAC yes 174151536 2075 70768562
chr5 174153611 174153617 MZF1 JASPAR yes 174151536 2075 70768563
chr5 174153616 174153626 BARHL2 JASPAR yes 174151536 2080 70768564
chr5 174153618 174153622 YY1 TRANSFAC yes 174151536 2082 70768565
chr5 174153619 174153629 HOXC10 JASPAR yes 174151536 2083 70768566
chr5 174153619 174153629 HOXD11 JASPAR yes 174151536 2083 70768567
chr5 174153619 174153630 HOXC11 JASPAR yes 174151536 2083 70768568
chr5 174153619 174153630 HOXC12 JASPAR yes 174151536 2083 70768569
chr5 174153634 174153644 FIGLA JASPAR yes 174151536 2098 70768570
chr5 174153637 174153650 SMAD2 JASPAR yes 174151536 2101 70768571
chr5 174153641 174153654 SMAD2 JASPAR yes 174151536 2105 70768572
SNPs associated with MSX2[ENSG00000120149.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr5 174151646 rs4647952 C G 0 Esophagus 0.000328847 8720091
chr5 174151646 rs4647952 C G 0 Esophagus 0.0324441 8720091
chr5 173243251 rs4041225 TAC T 908285 Heart 0.232504 8713469
chr5 175117323 rs7718548 A C 959427 Heart 0.285465 8725135
chr5 174017665 rs113157826 G A 133871 Pancreas 0.237716 8719153
chr5 175088653 rs4868528 A G 930757 Breast 0.230382 8724870
chr5 173396501 rs144126497 C T 755035 Spleen 0.463435 8714806
chr5 175010396 rs10042293 G T 852500 Ovary 0.281525 8724390
chr5 174151646 rs4647952 C G 0 Thyroid 3.28803e-05 8720091
chr5 174037865 rs56325919 GA G 113671 Stomach 0.0660199 8719342
Details of MSX2[ENSG00000120149.7]
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Genomic Location chr5:174151536-174157896[+]
TSS 174151536
Gene Name MSX2
Ensembl ID ENSG00000120149.7
ENTREZID 4488
Uniprot
D6RIS4
P35548
Protein Name
Homeobox protein MSX-2
Expression levels of MSX2[ENSG00000120149.7]
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