EnhancerDB
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Enhancers that regulate SOX9[ENSG00000125398.5]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 70012685 70029835 enh4575 70117161 87326
Blood (OCI-LY7) Pancreas (Panc1) Bone (Osteoblast) Blood (Karpas-422)
chr17 70023919 70023934 vista25792 70117161 93227
VISTA
chr17 70057465 70062475 enh81266 70117161 54686
Prostate (PC-3)
chr17 70070185 70078175 enh81267 70117161 38986
Pancreas Prostate (PC-3)
chr17 70086925 70091075 enh92752 70117161 26086
Liver (HepG2)
chr17 70091425 70097455 enh81268 70117161 19706
Prostate (PC-3) Lung (PC-9)
chr17 70098825 70103335 enh108676 70117161 13826
Lung (PC-9)
chr17 70103648 70103780 vista25793 70117161 13381
VISTA
chr17 70108010 70112160 enh65068 70117161 5001
Heart
chr17 70113355 70113523 vista25794 70117161 3638
VISTA
chr17 70122851 70122907 vista25795 70117161 5690
VISTA
chr17 70129265 70135257 enh32346 70117161 12104
Astrocyte Prostate (PC-3) Prostate (RWPE1)
chr17 70137465 70141615 enh52572 70117161 20304
Large Intestine
chr17 70145111 70151163 enh32347 70117161 27950
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Brain (SK-N-SH) Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Thyroid Breast Lung (PC-9) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Heart
chr17 70147771 70147892 vista25796 70117161 30610
VISTA
chr17 70153085 70157635 enh75939 70117161 35924
Muscle (A673)
chr17 70159707 70163857 enh69315 70117161 42546
Neural Stem Cells (H9)
chr17 70167914 70168310 vista25797 70117161 50753
VISTA
chr17 70169954 70175655 enh32348 70117161 52793
Large Intestine Prostate (RWPE1) Astrocyte Stomach Muscle (A673) Muscle (Myoblast) Pancreas Muscle (Myotube) Epithelial (MCF-7)
chr17 70176805 70181575 enh96768 70117161 59644
Stomach Thyroid Epithelial (MCF-7)
chr17 70181805 70192048 enh4576 70117161 64644
Astrocyte Bone (Osteoblast) Lung Thyroid Blood (Karpas-422) Muscle (Myoblast) Muscle (Myotube) Stomach
chr17 70183324 70183341 vista25798 70117161 66163
VISTA
chr17 70188799 70188845 vista25799 70117161 71638
VISTA
chr17 70194547 70194569 vista25800 70117161 77386
VISTA
chr17 70216765 70221435 enh52573 70117161 99604
Large Intestine
Transcript facotrs that regulate SOX9[ENSG00000125398.5]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr17 70112814 70114527 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 70117161 2634 108289628
chr17 70113220 70113530 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 70117161 3631 108289629
chr17 70113386 70113401 TP53 JASPAR yes 70117161 3760 21287041
chr17 70113394 70113610 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 70117161 3551 108289630
chr17 70113400 70113404 LFA1 TRANSFAC yes 70117161 3757 21287042
chr17 70113408 70113423 SCRT1 JASPAR yes 70117161 3738 21287043
chr17 70113411 70113423 PKNOX1 JASPAR yes 70117161 3738 21287044
chr17 70113425 70113446 MAFG JASPAR yes 70117161 3715 21287045
chr17 70113430 70113448 MAFF JASPAR yes 70117161 3713 21287046
chr17 70113441 70113453 FOXI1 JASPAR yes 70117161 3708 21287047
chr17 70113444 70113448 YY1 TRANSFAC yes 70117161 3713 21287048
chr17 70113444 70113454 HOXA13 JASPAR yes 70117161 3707 21287049
chr17 70113444 70113454 HOXB13 JASPAR yes 70117161 3707 21287050
chr17 70113444 70113454 HOXD13 JASPAR yes 70117161 3707 21287051
chr17 70113444 70113455 HOXA10 JASPAR yes 70117161 3706 21287052
chr17 70113445 70113454 CDX1 JASPAR yes 70117161 3707 21287053
chr17 70113449 70113459 CEBPG JASPAR yes 70117161 3702 21287054
chr17 70113466 70113470 NFE TRANSFAC yes 70117161 3691 21287055
chr17 70113466 70113471 GATA1 TRANSFAC yes 70117161 3690 21287056
chr17 70113466 70113472 GATA3 JASPAR yes 70117161 3689 21287057
chr17 70113467 70113482 HSF1 JASPAR yes 70117161 3679 21287058
chr17 70113468 70113481 HSF1 JASPAR yes 70117161 3680 21287059
chr17 70113468 70113481 HSF4 JASPAR yes 70117161 3680 21287060
chr17 70113471 70113492 IRF1 JASPAR yes 70117161 3669 21287061
chr17 70113473 70113488 PRDM1 JASPAR yes 70117161 3673 21287062
chr17 70113473 70113488 STAT2 JASPAR yes 70117161 3673 21287063
chr17 70113474 70113488 SPIC JASPAR yes 70117161 3673 21287064
chr17 70113474 70113488 STAT1 JASPAR yes 70117161 3673 21287065
chr17 70113478 70113483 ETS2 TRANSFAC yes 70117161 3678 21287066
chr17 70113490 70113503 SCRT2 JASPAR yes 70117161 3658 21287067
chr17 70113500 70113504 NFE TRANSFAC yes 70117161 3657 21287068
chr17 70113512 70113519 E2F1 TRANSFAC yes 70117161 3642 21287069
SNPs associated with SOX9[ENSG00000125398.5], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 70147870 rs16977110 T C 25309 Heart 0.0204678 5031579
chr17 71067060 rs60689948 G A 944499 Breast 0.19508 5041088
chr17 70303316 rs150375417 T C 180755 Spleen 0.274033 5032855
chr17 70681670 rs75629267 C G 559109 Ovary 0.414573 5037372
chr17 70431785 rs73995813 C A,T 309224 Uterus 0.504906 5034384
chr17 70156205 rs73358421 A C 33644 Liver 0.451245 5031689
chr17 70472337 rs1177982 T C 349776 Lung 0.127622 5034934
chr17 70186459 rs11868011 G A 63898 Stomach 0.165638 5032049
chr17 70887413 rs61218646 A G 764852 Adrenal 0.223046 5039159
Details of SOX9[ENSG00000125398.5]
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Genomic Location chr17:70117161-70122561[+]
TSS 70117161
Gene Name SOX9
Ensembl ID ENSG00000125398.5
ENTREZID 6662
Uniprot
P48436
Protein Name
SRY
SRY-box 9
Transcription factor
Transcription factor SOX-9
Expression levels of SOX9[ENSG00000125398.5]
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