EnhancerDB
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Enhancers that regulate SCAF1[ENSG00000126461.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr19 50048325 50061855 enh52907 50145382 83527
Blood (T-cell) Large Intestine Stomach
chr19 50064005 50077842 enh5199 50145382 67540
Bone Marrow (K562) Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Kidney Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Peripheral Blood (MM.1S) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Breast Spleen Prostate (RWPE1) Lung Muscle (A673) Heart
chr19 50090402 50090603 vista29773 50145382 54779
VISTA
chr19 50092384 50092705 vista29774 50145382 52677
VISTA
chr19 50113451 50117781 enh62738 50145382 27601
Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Bone (Osteoblast) Colon (HCT116)
chr19 50116585 50116794 vista29775 50145382 28588
VISTA
chr19 50132045 50137375 enh18141 50145382 8007
Muscle (A673) Placenta Pancreas Heart Stomach
chr19 50141205 50141513 vista29776 50145382 3869
VISTA
chr19 50173685 50182935 enh5200 50145382 28303
Uterus Blood (Karpas-422)
chr19 50205874 50206272 vista29777 50145382 60492
VISTA
chr19 50218748 50233835 enh65194 50145382 73366
Bone Marrow (K562) Ovary Prostate (RWPE1) Colon (HCT116) Lung (PC-9) Pancreas (Panc1) Uterus Heart
chr19 50231635 50231822 vista29778 50145382 86253
VISTA
Transcript facotrs that regulate SCAF1[ENSG00000126461.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr19 50141080 50141502 ZNF263 UCSC Txn Factor no Conserved 50145382 3880 108423618
chr19 50141178 50141614 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 50145382 3768 108423619
chr19 50141216 50141586 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 50145382 3796 108423620
chr19 50141225 50141689 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 50145382 3693 108423621
chr19 50141241 50141251 GSX1 JASPAR yes 50145382 4131 70867204
chr19 50141241 50141251 GSX2 JASPAR yes 50145382 4131 70867205
chr19 50141242 50141250 BSX JASPAR yes 50145382 4132 70867206
chr19 50141242 50141252 HOXB13 JASPAR yes 50145382 4130 70867207
chr19 50141242 50141252 HOXD13 JASPAR yes 50145382 4130 70867208
chr19 50141242 50141258 POU4F2 JASPAR yes 50145382 4124 70867209
chr19 50141242 50141258 POU4F3 JASPAR yes 50145382 4124 70867210
chr19 50141244 50141248 YY1 TRANSFAC yes 50145382 4134 70867211
chr19 50141244 50141258 POU4F1 JASPAR yes 50145382 4124 70867212
chr19 50141244 50141259 HNF1A JASPAR yes 50145382 4123 70867213
chr19 50141245 50141257 HNF1B JASPAR yes 50145382 4125 70867214
chr19 50141246 50141260 POU4F1 JASPAR yes 50145382 4122 70867215
chr19 50141246 50141262 POU4F3 JASPAR yes 50145382 4120 70867216
chr19 50141252 50141257 MYB TRANSFAC yes 50145382 4125 70867217
chr19 50141256 50141267 DMRT3 JASPAR yes 50145382 4115 70867218
chr19 50141270 50141500 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 50145382 3882 108423622
chr19 50141272 50141425 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 50145382 3957 108423623
chr19 50141282 50141292 SMAD3 JASPAR yes 50145382 4090 70867219
chr19 50141288 50141302 SPIC JASPAR yes 50145382 4080 70867220
chr19 50141292 50141304 FOXI1 JASPAR yes 50145382 4078 70867221
chr19 50141293 50141304 FOXP2 JASPAR yes 50145382 4078 70867222
chr19 50141296 50141317 ZNF263 JASPAR yes 50145382 4065 70867223
chr19 50141299 50141320 ZNF263 JASPAR yes 50145382 4062 70867224
chr19 50141304 50141315 E2F6 JASPAR yes 50145382 4067 70867225
chr19 50141304 50141325 ZNF263 JASPAR yes 50145382 4057 70867226
chr19 50141305 50141326 ZNF263 JASPAR yes 50145382 4056 70867227
chr19 50141307 50141328 ZNF263 JASPAR yes 50145382 4054 70867228
chr19 50141308 50141329 ZNF263 JASPAR yes 50145382 4053 70867229
chr19 50141311 50141332 ZNF263 JASPAR yes 50145382 4050 70867230
chr19 50141318 50141329 FLI1 JASPAR yes 50145382 4053 70867231
chr19 50141319 50141332 ELF1 JASPAR yes 50145382 4050 70867232
chr19 50141319 50141340 ZNF263 JASPAR yes 50145382 4042 70867233
chr19 50141320 50141341 ZNF263 JASPAR yes 50145382 4041 70867234
chr19 50141323 50141334 E2F6 JASPAR yes 50145382 4048 70867235
chr19 50141323 50141344 ZNF263 JASPAR yes 50145382 4038 70867236
chr19 50141326 50141347 ZNF263 JASPAR yes 50145382 4035 70867237
chr19 50141331 50141344 ELF1 JASPAR yes 50145382 4038 70867238
chr19 50141332 50141353 ZNF263 JASPAR yes 50145382 4029 70867239
chr19 50141335 50141356 ZNF263 JASPAR yes 50145382 4026 70867240
chr19 50141337 50141347 SP1 JASPAR yes 50145382 4035 70867241
chr19 50141338 50141359 ZNF263 JASPAR yes 50145382 4023 70867242
chr19 50141341 50141362 ZNF263 JASPAR yes 50145382 4020 70867243
chr19 50141343 50141353 SP1 JASPAR yes 50145382 4029 70867244
chr19 50141347 50141368 ZNF263 JASPAR yes 50145382 4014 70867245
chr19 50141348 50141369 ZNF263 JASPAR yes 50145382 4013 70867246
chr19 50141349 50141359 SP1 JASPAR yes 50145382 4023 70867247
chr19 50141350 50141371 ZNF263 JASPAR yes 50145382 4011 70867248
chr19 50141352 50141362 SP1 JASPAR yes 50145382 4020 70867249
chr19 50141353 50141374 ZNF263 JASPAR yes 50145382 4008 70867250
chr19 50141354 50141375 ZNF263 JASPAR yes 50145382 4007 70867251
chr19 50141358 50141368 SP1 JASPAR yes 50145382 4014 70867252
chr19 50141379 50141384 SP1 TRANSFAC yes 50145382 3998 70867253
chr19 50141397 50141411 EBF1 JASPAR yes 50145382 3971 70867254
chr19 50141399 50141410 EBF1 JASPAR yes 50145382 3972 70867255
chr19 50141405 50141410 ETS2 TRANSFAC yes 50145382 3972 70867256
chr19 50141405 50141416 NFKB1 JASPAR yes 50145382 3966 70867257
chr19 50141406 50141416 NFKB1 JASPAR yes 50145382 3966 70867258
chr19 50141410 50141414 H4TF2 TRANSFAC yes 50145382 3968 70867259
chr19 50141420 50141424 H1TF2 TRANSFAC yes 50145382 3958 70867260
chr19 50141420 50141424 NFE TRANSFAC yes 50145382 3958 70867261
chr19 50141420 50141424 SRF TRANSFAC yes 50145382 3958 70867262
chr19 50141424 50141599 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 50145382 3783 108423624
chr19 50141440 50141446 NFE2 TRANSFAC yes 50145382 3936 70867263
chr19 50141444 50141459 TFAP2A JASPAR yes 50145382 3923 70867264
chr19 50141444 50141459 TFAP2C JASPAR yes 50145382 3923 70867265
chr19 50141446 50141460 PLAG1 JASPAR yes 50145382 3922 70867266
chr19 50141448 50141457 TFAP2A JASPAR yes 50145382 3925 70867267
chr19 50141457 50141465 SP1 TRANSFAC yes 50145382 3917 70867268
chr19 50141462 50141468 SP1 TRANSFAC yes 50145382 3914 70867269
chr19 50141466 50141477 FLI1 JASPAR yes 50145382 3905 70867270
chr19 50141468 50141476 EHF JASPAR yes 50145382 3906 70867271
chr19 50141480 50141484 H4TF2 TRANSFAC yes 50145382 3898 70867272
chr19 50141485 50141497 INSM1 JASPAR yes 50145382 3885 70867273
SNPs associated with SCAF1[ENSG00000126461.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
Details of SCAF1[ENSG00000126461.10]
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Genomic Location chr19:50145382-50161899[+]
TSS 50145382
Gene Name SCAF1
Ensembl ID ENSG00000126461.10
ENTREZID 58506
Uniprot
Q9H7N4
Protein Name
arginine/serine-rich 19
SCAF1 protein
Splicing factor
Expression levels of SCAF1[ENSG00000126461.10]
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