EnhancerDB
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Enhancers that regulate CASQ1[ENSG00000143318.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 160072097 160072234 vista3571 160160285 88051
VISTA
chr1 160087563 160087915 vista3572 160160285 72370
VISTA
chr1 160092454 160097088 enh94832 160160285 63197
Muscle (Myoblast)
chr1 160135405 160141135 enh12316 160160285 19150
Muscle (A673) Placenta
chr1 160158522 160158897 vista3573 160160285 1388
VISTA
chr1 160182240 160182579 vista3574 160160285 21955
VISTA
chr1 160202735 160202981 vista3575 160160285 42450
VISTA
chr1 160203977 160204039 vista3576 160160285 43692
VISTA
chr1 160214925 160219075 enh87640 160160285 54640
Pancreas
chr1 160219285 160229475 enh43061 160160285 59000
Skin (Keratinocyte) Liver (HepG2) Prostate (RWPE1) Lung (PC-9) Liver Bone (Osteoblast) Stomach Muscle (A673) Colon (HCT116) Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Heart
chr1 160230168 160230604 vista3577 160160285 69883
VISTA
chr1 160242090 160242278 vista3578 160160285 81805
VISTA
Transcript facotrs that regulate CASQ1[ENSG00000143318.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 160157968 160158564 MYOD GTRD no Muscle (Myoblast) 160160285 1721 107839262
chr1 160158532 160158808 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160160285 1477 107839263
chr1 160158562 160158580 RARA JASPAR yes 160160285 1705 118383174
chr1 160158568 160158579 ESRRA JASPAR yes 160160285 1706 118383175
chr1 160158570 160158578 NR4A2 JASPAR yes 160160285 1707 118383176
chr1 160158572 160158576 ESR1 TRANSFAC yes 160160285 1709 118383177
chr1 160158579 160158597 TP63 JASPAR yes 160160285 1688 118383178
chr1 160158579 160159036 ZNF274 GTRD no Bone Marrow (K562) 160160285 1249 107839264
chr1 160158581 160158593 YY1 JASPAR yes 160160285 1692 118383179
chr1 160158585 160158600 SCRT1 JASPAR yes 160160285 1685 118383180
chr1 160158613 160158617 NFE TRANSFAC yes 160160285 1668 118383181
chr1 160158621 160158634 SMAD2 JASPAR yes 160160285 1651 118383182
chr1 160158622 160158902 ZNF274 GTRD no Liver (HepG2) 160160285 1383 107839265
chr1 160158623 160158634 E2F4 JASPAR yes 160160285 1651 118383183
chr1 160158623 160158634 E2F6 JASPAR yes 160160285 1651 118383184
chr1 160158624 160158635 E2F1 JASPAR yes 160160285 1650 118383185
chr1 160158635 160158647 TEAD1 JASPAR yes 160160285 1638 118383186
chr1 160158637 160158647 TEAD1 JASPAR yes 160160285 1638 118383187
chr1 160158637 160158647 TEAD4 JASPAR yes 160160285 1638 118383188
chr1 160158638 160158646 TEAD3 JASPAR yes 160160285 1639 118383189
chr1 160158639 160158653 SPI1 JASPAR yes 160160285 1632 118383190
chr1 160158640 160158959 ZNF274 GTRD no Bone Marrow (K562) 160160285 1326 107839266
chr1 160158648 160158658 TBR1 JASPAR yes 160160285 1627 118383191
chr1 160158676 160158918 ZNF274 GTRD no Bone Marrow (K562) 160160285 1367 107839267
chr1 160158682 160158697 TFAP2A JASPAR yes 160160285 1588 118383192
chr1 160158689 160158698 THAP1 JASPAR yes 160160285 1587 118383193
chr1 160158692 160158696 LFA1 TRANSFAC yes 160160285 1589 118383194
chr1 160158701 160158707 MZF1 JASPAR yes 160160285 1578 118383195
chr1 160158706 160158725 PAX5 JASPAR yes 160160285 1560 118383196
chr1 160158707 160158716 ZEB1 JASPAR yes 160160285 1569 118383197
chr1 160158710 160158715 USF2 TRANSFAC yes 160160285 1570 118383198
chr1 160158721 160158727 TCF4 TRANSFAC yes 160160285 1558 118383199
chr1 160158724 160158745 REST JASPAR yes 160160285 1540 118383200
chr1 160158725 160158744 REST JASPAR yes 160160285 1541 118383201
chr1 160158727 160158742 TFAP2A JASPAR yes 160160285 1543 118383202
chr1 160158728 160158743 HNF4A JASPAR yes 160160285 1542 118383203
chr1 160158729 160158744 TFAP2A JASPAR yes 160160285 1541 118383204
chr1 160158729 160158744 TFAP2C JASPAR yes 160160285 1541 118383205
chr1 160158730 160158742 TFAP2A JASPAR yes 160160285 1543 118383206
chr1 160158730 160158742 TFAP2B JASPAR yes 160160285 1543 118383207
chr1 160158730 160158742 TFAP2C JASPAR yes 160160285 1543 118383208
chr1 160158730 160158745 TFAP2A JASPAR yes 160160285 1540 118383209
chr1 160158735 160158748 NFKB1 JASPAR yes 160160285 1537 118383210
chr1 160158735 160158748 NFKB2 JASPAR yes 160160285 1537 118383211
chr1 160158736 160158746 NFKB1 JASPAR yes 160160285 1539 118383212
chr1 160158736 160158746 RELA JASPAR yes 160160285 1539 118383213
chr1 160158736 160158746 REL JASPAR yes 160160285 1539 118383214
chr1 160158736 160158747 NFKB1 JASPAR yes 160160285 1538 118383215
chr1 160158737 160158748 NFKB1 JASPAR yes 160160285 1537 118383216
chr1 160158769 160158780 SPDEF JASPAR yes 160160285 1505 118383217
chr1 160158773 160158778 GATA2 JASPAR yes 160160285 1507 118383218
chr1 160158839 160159631 ZNF143 GTRD no Epithelial (MCF-7) 160160285 654 107839268
chr1 160158845 160158853 MEIS2 JASPAR yes 160160285 1432 118383219
chr1 160158845 160158853 MEIS3 JASPAR yes 160160285 1432 118383220
chr1 160158846 160158858 PKNOX1 JASPAR yes 160160285 1427 118383221
chr1 160158846 160158858 PKNOX2 JASPAR yes 160160285 1427 118383222
chr1 160158846 160158858 TGIF1 JASPAR yes 160160285 1427 118383223
chr1 160158846 160158858 TGIF2 JASPAR yes 160160285 1427 118383224
chr1 160158847 160158857 MSC JASPAR yes 160160285 1428 118383225
chr1 160158847 160158857 MYF6 JASPAR yes 160160285 1428 118383226
chr1 160158847 160158857 TFAP4 JASPAR yes 160160285 1428 118383227
chr1 160158852 160158856 NFE TRANSFAC yes 160160285 1429 118383228
chr1 160158855 160158869 PLAG1 JASPAR yes 160160285 1416 118383229
chr1 160158860 160158867 E2F1 TRANSFAC yes 160160285 1418 118383230
SNPs associated with CASQ1[ENSG00000143318.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 160779494 rs113485448 C T 607818 Esophagus 0.180544 668559
chr1 159857555 rs74124749 G T 302730 Esophagus 0.31179 662381
chr1 161068836 rs11576830 A C 897160 Thyroid 0.0345671 670233
chr1 159890969 rs55633025 G A,C 269316 Liver 0.430934 662636
chr1 159935025 rs181068202 G A,T 225260 Adrenal 0.297164 663016
Details of CASQ1[ENSG00000143318.8]
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Genomic Location chr1:160160285-160171676[+]
TSS 160160285
Gene Name CASQ1
Ensembl ID ENSG00000143318.8
ENTREZID 844
Uniprot
P31415
Protein Name
Calsequestrin
Calsequestrin-1
Expression levels of CASQ1[ENSG00000143318.8]
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