EnhancerDB
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Enhancers that regulate LRRC52[ENSG00000162763.3]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 165423505 165427655 enh95913 165513244 85589
Epithelial (MCF-7)
chr1 165457525 165461675 enh107296 165513244 51569
Lung
chr1 165462345 165467955 enh12341 165513244 45289
Placenta
chr1 165475645 165481835 enh103125 165513244 31409
Peripheral Blood (MM.1S)
chr1 165482785 165487975 enh103126 165513244 25269
Peripheral Blood (MM.1S)
chr1 165492985 165502715 enh64117 165513244 10529
Thyroid Spleen Liver (HepG2) Heart
chr1 165506688 165506898 vista3728 165513244 6346
VISTA
chr1 165517265 165521415 enh101143 165513244 4021
Thyroid
chr1 165528185 165532395 enh64118 165513244 14941
Lung Ovary Heart
chr1 165560285 165570275 enh98553 165513244 47041
Cervix (HeLa-S3) Brain (SK-N-MC) Peripheral Blood (MM.1S) Pancreas (Panc1) Uterus
chr1 165579371 165583629 enh60185 165513244 66127
Blood (OCI-LY7)
chr1 165599142 165603368 enh86819 165513244 85898
Blood (GM12878)
chr1 165608345 165613635 enh12342 165513244 95101
Placenta Peripheral Blood (MM.1S) Lung
Transcript facotrs that regulate LRRC52[ENSG00000162763.3]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 165517268 165517276 NR4A2 JASPAR yes 165513244 4024 32789925
chr1 165517268 165517283 HNF4A JASPAR yes 165513244 4024 32789926
chr1 165517269 165517283 RXRB JASPAR yes 165513244 4025 32789927
chr1 165517269 165517283 RXRG JASPAR yes 165513244 4025 32789928
chr1 165517269 165517284 NR2C2 JASPAR yes 165513244 4025 32789929
chr1 165517301 165517306 GATA1 TRANSFAC yes 165513244 4057 32789930
chr1 165517316 165517321 GATA2 JASPAR yes 165513244 4072 32789931
chr1 165517317 165517323 ZNF354C JASPAR yes 165513244 4073 32789932
chr1 165517322 165517326 YY1 TRANSFAC yes 165513244 4078 32789933
chr1 165517329 165517343 GATA2 JASPAR yes 165513244 4085 32789934
chr1 165517331 165517337 GATA3 JASPAR yes 165513244 4087 32789935
chr1 165517340 165517345 H4TF1 TRANSFAC yes 165513244 4096 32789936
chr1 165517340 165517355 STAT1 JASPAR yes 165513244 4096 32789937
chr1 165517353 165517356 MYB TRANSFAC yes 165513244 4109 32789938
chr1 165517367 165517379 FOXI1 JASPAR yes 165513244 4123 32789939
chr1 165517368 165517379 FOXP2 JASPAR yes 165513244 4124 32789940
chr1 165517369 165517377 FOXG1 JASPAR yes 165513244 4125 32789941
chr1 165517374 165517378 TEAD2 TRANSFAC yes 165513244 4130 32789942
chr1 165517374 165517379 TBP TRANSFAC yes 165513244 4130 32789943
chr1 165517374 165517380 TFIID TRANSFAC yes 165513244 4130 32789944
chr1 165517388 165517392 YY1 TRANSFAC yes 165513244 4144 32789945
chr1 165517400 165517411 BATF JASPAR yes 165513244 4156 32789946
chr1 165517405 165517409 YY1 TRANSFAC yes 165513244 4161 32789947
chr1 165517416 165517434 NR3C1 JASPAR yes 165513244 4172 32789948
chr1 165517417 165517422 ETS2 TRANSFAC yes 165513244 4173 32789949
chr1 165517417 165517425 FEV JASPAR yes 165513244 4173 32789950
chr1 165517426 165517441 HNF4A JASPAR yes 165513244 4182 32789951
chr1 165517427 165517441 NR2F1 JASPAR yes 165513244 4183 32789952
chr1 165517427 165517441 RXRB JASPAR yes 165513244 4183 32789953
chr1 165517427 165517441 RXRG JASPAR yes 165513244 4183 32789954
chr1 165517427 165517442 HNF4G JASPAR yes 165513244 4183 32789955
chr1 165517428 165517442 NR2F1 JASPAR yes 165513244 4184 32789956
chr1 165517461 165517478 ZNF410 JASPAR yes 165513244 4217 32789957
chr1 165517467 165517476 THAP1 JASPAR yes 165513244 4223 32789958
chr1 165517470 165517474 LFA1 TRANSFAC yes 165513244 4226 32789959
chr1 165517493 165517504 STAT1 JASPAR yes 165513244 4249 32789960
chr1 165517494 165517499 ETS2 TRANSFAC yes 165513244 4250 32789961
chr1 165517551 165517555 YY1 TRANSFAC yes 165513244 4307 32789962
chr1 165517555 165517570 MEF2A JASPAR yes 165513244 4311 32789963
chr1 165517556 165517571 MEF2C JASPAR yes 165513244 4312 32789964
chr1 165517557 165517569 MEF2A JASPAR yes 165513244 4313 32789965
chr1 165517558 165517568 MEF2A JASPAR yes 165513244 4314 32789966
chr1 165517559 165517563 YY1 TRANSFAC yes 165513244 4315 32789967
chr1 165517559 165517568 POU5F1B JASPAR yes 165513244 4315 32789968
chr1 165517559 165517571 POU2F1 JASPAR yes 165513244 4315 32789969
chr1 165517560 165517569 POU5F1B JASPAR yes 165513244 4316 32789970
chr1 165517566 165517573 NKX3-1 JASPAR yes 165513244 4322 32789971
chr1 165517587 165517596 NFIX JASPAR yes 165513244 4343 32789972
chr1 165517589 165517595 NFIC JASPAR yes 165513244 4345 32789973
chr1 165517594 165517604 MYF6 JASPAR yes 165513244 4350 32789974
chr1 165517610 165517620 HMBOX1 JASPAR yes 165513244 4366 32789975
chr1 165517612 165517615 MYB TRANSFAC yes 165513244 4368 32789976
chr1 165517616 165517619 MYB TRANSFAC yes 165513244 4372 32789977
chr1 165517645 165517656 NFIL3 JASPAR yes 165513244 4401 32789978
chr1 165517646 165517658 DBP JASPAR yes 165513244 4402 32789979
chr1 165517646 165517658 HLF JASPAR yes 165513244 4402 32789980
chr1 165517646 165517658 JDP2 JASPAR yes 165513244 4402 32789981
chr1 165517646 165517658 TEF JASPAR yes 165513244 4402 32789982
chr1 165517647 165517657 CEBPB JASPAR yes 165513244 4403 32789983
chr1 165517647 165517657 CEBPD JASPAR yes 165513244 4403 32789984
chr1 165517647 165517657 CEBPE JASPAR yes 165513244 4403 32789985
chr1 165517647 165517657 CEBPG JASPAR yes 165513244 4403 32789986
chr1 165517648 165517656 GMEB2 JASPAR yes 165513244 4404 32789987
chr1 165517648 165517659 NFIL3 JASPAR yes 165513244 4404 32789988
chr1 165517653 165517656 MYB TRANSFAC yes 165513244 4409 32789989
chr1 165517653 165517667 RORA JASPAR yes 165513244 4409 32789990
chr1 165517656 165517666 RORA JASPAR yes 165513244 4412 32789991
chr1 165517657 165517668 ESRRB JASPAR yes 165513244 4413 32789992
chr1 165517661 165517665 ESR1 TRANSFAC yes 165513244 4417 32789993
chr1 165517673 165517687 RORA JASPAR yes 165513244 4429 32789994
chr1 165517679 165517693 RXRG JASPAR yes 165513244 4435 32789995
chr1 165517701 165517704 MYB TRANSFAC yes 165513244 4457 32789996
chr1 165517716 165517720 LFA1 TRANSFAC yes 165513244 4472 32789997
chr1 165517730 165517750 TP63 JASPAR yes 165513244 4486 32789998
chr1 165517731 165517746 AR JASPAR yes 165513244 4487 32789999
chr1 165517734 165517746 HES5 JASPAR yes 165513244 4490 32790000
chr1 165517736 165517746 MAX JASPAR yes 165513244 4492 32790001
chr1 165517747 165517757 SREBF1 JASPAR yes 165513244 4503 32790002
chr1 165517747 165517757 SREBF2 JASPAR yes 165513244 4503 32790003
chr1 165517750 165517763 SMAD2 JASPAR yes 165513244 4506 32790004
chr1 165517752 165517760 MEIS3 JASPAR yes 165513244 4508 32790005
chr1 165517766 165517770 LFA1 TRANSFAC yes 165513244 4522 32790006
chr1 165517771 165517781 NKX2-3 JASPAR yes 165513244 4527 32790007
chr1 165517800 165517815 TFAP2C JASPAR yes 165513244 4556 32790008
chr1 165517802 165517814 TFAP2A JASPAR yes 165513244 4558 32790009
chr1 165517802 165517814 TFAP2B JASPAR yes 165513244 4558 32790010
chr1 165517802 165517814 TFAP2C JASPAR yes 165513244 4558 32790011
chr1 165517803 165517814 TFAP2A JASPAR yes 165513244 4559 32790012
chr1 165517803 165517814 TFAP2B JASPAR yes 165513244 4559 32790013
chr1 165517803 165517814 TFAP2C JASPAR yes 165513244 4559 32790014
chr1 165517838 165517850 TEF JASPAR yes 165513244 4594 32790015
chr1 165517842 165517853 CDX2 JASPAR yes 165513244 4598 32790016
chr1 165517843 165517854 HOXA10 JASPAR yes 165513244 4599 32790017
chr1 165517844 165517853 CDX1 JASPAR yes 165513244 4600 32790018
chr1 165517844 165517854 HOXA13 JASPAR yes 165513244 4600 32790019
chr1 165517844 165517854 HOXB13 JASPAR yes 165513244 4600 32790020
chr1 165517844 165517854 HOXC10 JASPAR yes 165513244 4600 32790021
chr1 165517844 165517854 HOXD13 JASPAR yes 165513244 4600 32790022
chr1 165517845 165517856 PROP1 JASPAR yes 165513244 4601 32790023
chr1 165517862 165517866 TEAD2 TRANSFAC yes 165513244 4618 32790024
chr1 165517865 165517886 REST JASPAR yes 165513244 4621 32790025
chr1 165517866 165517885 REST JASPAR yes 165513244 4622 32790026
chr1 165517885 165517889 NFE TRANSFAC yes 165513244 4641 32790027
chr1 165517885 165517890 GATA1 TRANSFAC yes 165513244 4641 32790028
chr1 165517885 165517891 GATA3 JASPAR yes 165513244 4641 32790029
chr1 165517894 165517899 GATA2 JASPAR yes 165513244 4650 32790030
chr1 165517897 165517901 TEAD2 TRANSFAC yes 165513244 4653 32790031
chr1 165517908 165517915 NKX3-1 JASPAR yes 165513244 4664 32790032
chr1 165517913 165517916 MYB TRANSFAC yes 165513244 4669 32790033
chr1 165517921 165517936 HNF4A JASPAR yes 165513244 4677 32790034
chr1 165517922 165517936 NR2F1 JASPAR yes 165513244 4678 32790035
chr1 165517922 165517936 RXRG JASPAR yes 165513244 4678 32790036
chr1 165517922 165517937 HNF4G JASPAR yes 165513244 4678 32790037
chr1 165517931 165517939 FEV JASPAR yes 165513244 4687 32790038
chr1 165517931 165517944 JUN JASPAR yes 165513244 4687 32790039
chr1 165517951 165517966 MEF2C JASPAR yes 165513244 4707 32790040
chr1 165517952 165517957 GATA2 JASPAR yes 165513244 4708 32790041
chr1 165517952 165517967 MEF2A JASPAR yes 165513244 4708 32790042
chr1 165517953 165517965 MEF2A JASPAR yes 165513244 4709 32790043
chr1 165517953 165517965 MEF2B JASPAR yes 165513244 4709 32790044
chr1 165517953 165517965 MEF2D JASPAR yes 165513244 4709 32790045
chr1 165517954 165517964 MEF2A JASPAR yes 165513244 4710 32790046
chr1 165517968 165517978 TEAD1 JASPAR yes 165513244 4724 32790047
chr1 165517968 165517978 TEAD4 JASPAR yes 165513244 4724 32790048
chr1 165517968 165517980 TEAD1 JASPAR yes 165513244 4724 32790049
chr1 165517969 165517977 TEAD3 JASPAR yes 165513244 4725 32790050
chr1 165517980 165517988 MEIS2 JASPAR yes 165513244 4736 32790051
chr1 165517980 165517988 MEIS3 JASPAR yes 165513244 4736 32790052
chr1 165517981 165517985 NFE TRANSFAC yes 165513244 4737 32790053
chr1 165517981 165517992 CDX2 JASPAR yes 165513244 4737 32790054
chr1 165517982 165517993 HOXA10 JASPAR yes 165513244 4738 32790055
chr1 165517982 165517993 HOXC11 JASPAR yes 165513244 4738 32790056
chr1 165517982 165517993 HOXC12 JASPAR yes 165513244 4738 32790057
chr1 165517982 165517993 HOXC13 JASPAR yes 165513244 4738 32790058
chr1 165517982 165517993 HOXD12 JASPAR yes 165513244 4738 32790059
chr1 165517983 165517992 CDX1 JASPAR yes 165513244 4739 32790060
chr1 165517983 165517993 HOXC10 JASPAR yes 165513244 4739 32790061
chr1 165517983 165517993 HOXD11 JASPAR yes 165513244 4739 32790062
chr1 165517983 165517993 HOXD13 JASPAR yes 165513244 4739 32790063
chr1 165518003 165518007 YY1 TRANSFAC yes 165513244 4759 32790064
chr1 165518015 165518029 POU1F1 JASPAR yes 165513244 4771 32790065
chr1 165518016 165518028 POU3F1 JASPAR yes 165513244 4772 32790066
chr1 165518016 165518028 POU3F2 JASPAR yes 165513244 4772 32790067
chr1 165518016 165518029 POU3F3 JASPAR yes 165513244 4772 32790068
chr1 165518017 165518021 YY1 TRANSFAC yes 165513244 4773 32790069
chr1 165518017 165518029 POU2F1 JASPAR yes 165513244 4773 32790070
chr1 165518018 165518027 POU3F4 JASPAR yes 165513244 4774 32790071
chr1 165518018 165518027 POU5F1B JASPAR yes 165513244 4774 32790072
chr1 165518018 165518038 TBX19 JASPAR yes 165513244 4774 32790073
chr1 165518023 165518027 YY1 TRANSFAC yes 165513244 4779 32790074
chr1 165518048 165518063 FOXP1 JASPAR yes 165513244 4804 32790075
chr1 165518087 165518092 GATA2 JASPAR yes 165513244 4843 32790076
chr1 165518118 165518127 NKX2-8 JASPAR yes 165513244 4874 32790077
chr1 165518118 165518128 NKX2-3 JASPAR yes 165513244 4874 32790078
chr1 165518133 165518141 GATA3 JASPAR yes 165513244 4889 32790079
chr1 165518150 165518158 EHF JASPAR yes 165513244 4906 32790080
chr1 165518191 165518195 NFE TRANSFAC yes 165513244 4947 32790081
chr1 165518192 165518202 SMAD3 JASPAR yes 165513244 4948 32790082
chr1 165518216 165518230 E2F7 JASPAR yes 165513244 4972 32790083
chr1 165518219 165518224 SP1 TRANSFAC yes 165513244 4975 32790084
chr1 165518219 165518230 E2F4 JASPAR yes 165513244 4975 32790085
chr1 165518219 165518230 E2F6 JASPAR yes 165513244 4975 32790086
chr1 165518220 165518225 SP1 TRANSFAC yes 165513244 4976 32790087
chr1 165518231 165518237 GATA3 JASPAR yes 165513244 4987 32790088
chr1 165518233 165518243 TEAD1 JASPAR yes 165513244 4989 32790089
chr1 165518233 165518243 TEAD4 JASPAR yes 165513244 4989 32790090
chr1 165518239 165518255 ZNF143 JASPAR yes 165513244 4995 32790091
chr1 165518242 165518247 ETS2 TRANSFAC yes 165513244 4998 32790092
SNPs associated with LRRC52[ENSG00000162763.3], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 165483438 rs6662135 G A 29806 Esophagus 4.18751e-07 693788
chr1 165483600 rs285478 C A 29644 Heart 0.136578 693789
chr1 165038536 rs71628364 A G 474708 Heart 0.125498 691399
chr1 165508759 rs16846621 G A 4485 Thyroid 0.0277573 694008
Details of LRRC52[ENSG00000162763.3]
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Genomic Location chr1:165513244-165533198[+]
TSS 165513244
Gene Name LRRC52
Ensembl ID ENSG00000162763.3
ENTREZID 440699
Uniprot
Q8N7C0
Protein Name
Leucine-rich repeat-containing protein 52
Expression levels of LRRC52[ENSG00000162763.3]
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