EnhancerDB
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Enhancers that regulate SLC6A17[ENSG00000197106.6]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 110594561 110601876 enh27065 110693108 91232
Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Breast
chr1 110625005 110634855 enh554 110693108 58253
Placenta Blood (Karpas-422) Lung (PC-9) Pancreas Uterus
chr1 110626726 110627062 vista2894 110693108 66046
VISTA
chr1 110635397 110647375 enh12132 110693108 45733
Placenta Brain (SK-N-SH) Cervix (HeLa-S3) Lung (PC-9)
chr1 110654245 110663744 enh555 110693108 29364
Placenta Blood (Karpas-422) Lung (PC-9) Muscle (Myotube) Epithelial (MCF-7)
chr1 110671005 110680662 enh12133 110693108 12446
Muscle (Myotube) Placenta Lung (PC-9)
chr1 110672728 110673048 vista2895 110693108 20060
VISTA
chr1 110694968 110695154 vista2896 110693108 1860
VISTA
chr1 110711375 110711549 vista2897 110693108 18267
VISTA
chr1 110727265 110733875 enh12134 110693108 34157
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Prostate (RWPE1) Placenta Muscle (Myoblast) Muscle (Myotube) Uterus Heart
chr1 110750045 110765195 enh12135 110693108 56937
Cervix (HeLa-S3) Placenta Pancreas Uterus Stomach
chr1 110757728 110757889 vista2898 110693108 64620
VISTA
chr1 110778589 110778756 vista2899 110693108 85481
VISTA
Transcript facotrs that regulate SLC6A17[ENSG00000197106.6]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 110694983 110694992 HIC2 JASPAR yes 110693108 1875 118348969
chr1 110694990 110695008 NFYA JASPAR yes 110693108 1882 118348970
chr1 110694996 110695011 NFYB JASPAR yes 110693108 1888 118348971
chr1 110694998 110695003 NFY TRANSFAC yes 110693108 1890 118348972
chr1 110695019 110695030 FOS JASPAR yes 110693108 1911 118348973
chr1 110695019 110695030 FOSL1 JASPAR yes 110693108 1911 118348974
chr1 110695019 110695030 JUND JASPAR yes 110693108 1911 118348975
chr1 110695020 110695031 FOSL2 JASPAR yes 110693108 1912 118348976
chr1 110695020 110695031 JUNB JASPAR yes 110693108 1912 118348977
chr1 110695020 110695034 JUN JASPAR yes 110693108 1912 118348978
chr1 110695038 110695056 MAFF JASPAR yes 110693108 1930 118348979
chr1 110695043 110695053 MSC JASPAR yes 110693108 1935 118348980
chr1 110695043 110695053 TFAP4 JASPAR yes 110693108 1935 118348981
chr1 110695043 110695054 NRL JASPAR yes 110693108 1935 118348982
chr1 110695057 110695068 FOXH1 JASPAR yes 110693108 1949 118348983
chr1 110695061 110695066 NFY TRANSFAC yes 110693108 1953 118348984
chr1 110695095 110695105 SREBF1 JASPAR yes 110693108 1987 118348985
chr1 110695117 110695121 LFA1 TRANSFAC yes 110693108 2009 118348986
chr1 110695124 110695129 SP1 TRANSFAC yes 110693108 2016 118348987
chr1 110695127 110695131 LFA1 TRANSFAC yes 110693108 2019 118348988
SNPs associated with SLC6A17[ENSG00000197106.6], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 111001724 rs61784665 A G 256900 Esophagus 0.226445 552847
chr1 110641412 rs74115334 C G 51696 Esophagus 0.155354 550821
chr1 110256127 rs17854972 G A 436981 Heart 0.281685 547570
chr1 110674137 rs697387 T C 18971 Heart 0.271738 551104
chr1 110713909 rs7554444 C A,T 0 Breast 0.30233 551220
chr1 110270600 rs11101995 C G 422508 Uterus 0.443347 547732
chr1 111468756 rs1631763 T A 723932 Lung 0.243312 555854
chr1 109800086 rs78852738 A C 893022 Adrenal 0.202175 545834
Details of SLC6A17[ENSG00000197106.6]
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Genomic Location chr1:110693108-110744824[+]
TSS 110693108
Gene Name SLC6A17
Ensembl ID ENSG00000197106.6
ENTREZID 388662
Uniprot
Q9H1V8
Protein Name
Alternative protein SLC6A17
Sodium-dependent neutral amino acid transporter SLC6A17
Expression levels of SLC6A17[ENSG00000197106.6]
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