EnhancerDB
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Enhancers that regulate SMG5[ENSG00000198952.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 156149465 156158450 enh12296 156252620 94170
Bone Marrow (K562) Liver (HepG2) Large Intestine Placenta Neural Stem Cells (H9)
chr1 156180380 156189975 enh27148 156252620 62645
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Peripheral Blood (MM.1S) Blood (T-cell)
chr1 156194065 156200555 enh103108 156252620 52065
Peripheral Blood (MM.1S)
chr1 156211061 156215179 enh85978 156252620 37441
Colon (HCT116)
chr1 156249668 156250061 vista3453 156252620 2559
VISTA
chr1 156251648 156251762 vista3454 156252620 858
VISTA
chr1 156324142 156328975 enh85979 156252620 71522
Pancreas Colon (HCT116) Cervix (HeLa-S3) Ovary
chr1 156343245 156347395 enh49983 156252620 90625
Large Intestine
Transcript facotrs that regulate SMG5[ENSG00000198952.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 156248777 156249807 ZNF274 GTRD no Bone Marrow (K562) 156252620 2813 107836157
chr1 156249168 156249832 TCF7L2 GTRD no Colon (HCT116) 156252620 2788 107836158
chr1 156249187 156250365 ZNF274 GTRD no Blood (GM12878) 156252620 2255 107836159
chr1 156249281 156249733 ZNF274 GTRD no Bone Marrow (K562) 156252620 2887 107836160
chr1 156249320 156249826 ZNF274 GTRD no Blood (GM12878) 156252620 2794 107836161
chr1 156249340 156249939 TCF7L2 GTRD no Colon (HCT116) 156252620 2681 107836162
chr1 156249710 156249714 H4TF2 TRANSFAC yes 156252620 2906 118376929
chr1 156249716 156249720 LFA1 TRANSFAC yes 156252620 2900 118376930
chr1 156249728 156249731 MYB TRANSFAC yes 156252620 2889 118376931
chr1 156249730 156249737 SPI1 JASPAR yes 156252620 2883 118376932
chr1 156249730 156249738 FEV JASPAR yes 156252620 2882 118376933
chr1 156249732 156249737 ETS2 TRANSFAC yes 156252620 2883 118376934
chr1 156249747 156249764 PAX9 JASPAR yes 156252620 2856 118376935
chr1 156249749 156249763 PAX6 JASPAR yes 156252620 2857 118376936
chr1 156249753 156249764 CDX2 JASPAR yes 156252620 2856 118376937
chr1 156249754 156249765 HOXA10 JASPAR yes 156252620 2855 118376938
chr1 156249755 156249764 CDX1 JASPAR yes 156252620 2856 118376939
chr1 156249755 156249765 HOXA13 JASPAR yes 156252620 2855 118376940
chr1 156249755 156249765 HOXB13 JASPAR yes 156252620 2855 118376941
chr1 156249782 156249788 SOX10 JASPAR yes 156252620 2832 118376942
chr1 156249788 156249798 GSC2 JASPAR yes 156252620 2822 118376943
chr1 156249789 156249797 OTX1 JASPAR yes 156252620 2823 118376944
chr1 156249789 156249797 OTX2 JASPAR yes 156252620 2823 118376945
chr1 156249789 156249802 DUXA JASPAR yes 156252620 2818 118376946
chr1 156249804 156249812 FOXL1 JASPAR yes 156252620 2808 118376947
chr1 156249821 156249824 MYB TRANSFAC yes 156252620 2796 118376948
chr1 156249843 156249858 SOX21 JASPAR yes 156252620 2762 118376949
chr1 156249884 156249894 MZF1 JASPAR yes 156252620 2726 118376950
chr1 156249917 156249921 NFE TRANSFAC yes 156252620 2699 118376951
chr1 156249936 156249951 RUNX2 JASPAR yes 156252620 2669 118376952
chr1 156249998 156250011 NFKB2 JASPAR yes 156252620 2609 118376953
chr1 156250030 156250034 TEAD2 TRANSFAC yes 156252620 2586 118376954
chr1 156250037 156250047 MAX JASPAR yes 156252620 2573 118376955
chr1 156250040 156250051 FOSL1 JASPAR yes 156252620 2569 118376956
chr1 156250042 156250048 JUN TRANSFAC yes 156252620 2572 118376957
chr1 156250145 156252097 ZNF143 GTRD no Epithelial (MCF-7) 156252620 523 107836163
chr1 156251093 156253104 POLR2A UCSC Txn Factor no Conserved 156252620 484 107836164
chr1 156251158 156252030 ZNF274 GTRD no Bone Marrow (K562) 156252620 590 107836165
chr1 156251189 156251693 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 156252620 927 107836166
chr1 156251229 156251749 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 156252620 871 107836167
chr1 156251251 156252308 ZBTB33 GTRD no Brain (SK-N-SH) 156252620 312 107836168
chr1 156251265 156252037 ZBTB33 GTRD no Brain (SK-N-SH) 156252620 583 107836169
chr1 156251270 156252441 ZBTB33 GTRD no Brain (SK-N-SH) 156252620 179 107836170
chr1 156251288 156252113 ZBTB33 GTRD no Brain (SK-N-SH) 156252620 507 107836171
chr1 156251301 156252382 ZBTB33 GTRD no Brain (SK-N-SH) 156252620 238 107836172
chr1 156251500 156251955 ZBTB33 GTRD no Brain (SK-N-SH) 156252620 665 107836173
chr1 156251564 156251789 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 156252620 831 107836174
chr1 156251564 156251805 EGR1 UCSC Txn Factor no Conserved 156252620 815 107836175
chr1 156251565 156251805 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 156252620 815 107836176
chr1 156251569 156252337 P63 GTRD no Skin (Keratinocyte) 156252620 283 107836177
chr1 156251586 156251820 ZNF143 GTRD no Epithelial (MCF-7) 156252620 800 107836178
chr1 156251588 156252152 TCF7L2 GTRD no Colon (HCT116) 156252620 468 107836179
chr1 156251648 156252135 ZNF274 GTRD no Bone Marrow (K562) 156252620 485 107836180
chr1 156251653 156252217 TCF7L2 GTRD no Colon (HCT116) 156252620 403 107836181
chr1 156251662 156252278 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 156252620 342 107836182
chr1 156251663 156251951 ZBTB33 GTRD no Brain (SK-N-SH) 156252620 669 107836183
chr1 156251671 156252135 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 156252620 485 107836184
chr1 156251675 156251691 ZNF143 JASPAR yes 156252620 929 118376958
chr1 156251680 156251684 YY1 TRANSFAC yes 156252620 936 118376959
chr1 156251681 156251693 POU2F1 JASPAR yes 156252620 927 118376960
chr1 156251681 156251694 POU3F3 JASPAR yes 156252620 926 118376961
chr1 156251681 156251695 POU1F1 JASPAR yes 156252620 925 118376962
chr1 156251682 156251694 POU3F1 JASPAR yes 156252620 926 118376963
chr1 156251682 156251694 POU3F2 JASPAR yes 156252620 926 118376964
chr1 156251683 156251692 POU3F4 JASPAR yes 156252620 928 118376965
chr1 156251683 156251692 POU5F1B JASPAR yes 156252620 928 118376966
chr1 156251700 156251830 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 156252620 790 107836185
chr1 156251702 156251713 ETV2 JASPAR yes 156252620 907 118376967
chr1 156251703 156251713 ELK1 JASPAR yes 156252620 907 118376968
chr1 156251703 156251713 ELK3 JASPAR yes 156252620 907 118376969
chr1 156251703 156251713 ERG JASPAR yes 156252620 907 118376970
chr1 156251703 156251713 ETV1 JASPAR yes 156252620 907 118376971
chr1 156251703 156251713 ETV3 JASPAR yes 156252620 907 118376972
chr1 156251703 156251713 ETV4 JASPAR yes 156252620 907 118376973
chr1 156251703 156251713 ETV5 JASPAR yes 156252620 907 118376974
chr1 156251703 156251713 ETV6 JASPAR yes 156252620 907 118376975
chr1 156251703 156251713 FEV JASPAR yes 156252620 907 118376976
chr1 156251703 156251713 FLI1 JASPAR yes 156252620 907 118376977
chr1 156251703 156251713 GABPA JASPAR yes 156252620 907 118376978
chr1 156251705 156251711 ETS1 JASPAR yes 156252620 909 118376979
chr1 156251705 156251711 SPI1 JASPAR yes 156252620 909 118376980
chr1 156251737 156252137 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 156252620 483 107836186
chr1 156251738 156252278 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 156252620 342 107836187
chr1 156251743 156251749 PEA3 TRANSFAC yes 156252620 871 118376981
chr1 156251744 156251752 EHF JASPAR yes 156252620 868 118376982
SNPs associated with SMG5[ENSG00000198952.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 156049877 rs61813324 C T 169138 Esophagus 0.0814608 646720
Details of SMG5[ENSG00000198952.7]
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Genomic Location chr1:156219015-156252620[-]
TSS 156252620
Gene Name SMG5
Ensembl ID ENSG00000198952.7
ENTREZID 23381
Uniprot
Q9UPR3
Protein Name
Protein SMG5
Expression levels of SMG5[ENSG00000198952.7]
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