| Chrom. | Start | End | Enhancer ID | TSS of gene | Distance between enhancer and TSS | Tissues that enhancer appears | More |
|---|---|---|---|---|---|---|---|
| chr6 | 31439905 | 31445779 | enh38946 | 31539831 | 94052 |
|
|
| chr6 | 31450941 | 31456208 | enh46104 | 31539831 | 83623 |
|
|
| chr6 | 31459645 | 31464975 | enh9032 | 31539831 | 74856 |
|
|
| chr6 | 31504605 | 31508755 | enh9033 | 31539831 | 31076 |
|
|
| chr6 | 31520845 | 31534030 | enh9034 | 31539831 | 5801 |
|
|
| chr6 | 31529822 | 31530211 | vista51571 | 31539831 | 9620 |
|
|
| chr6 | 31530961 | 31531387 | vista51572 | 31539831 | 8444 |
|
|
| chr6 | 31542399 | 31542828 | vista51573 | 31539831 | 2568 |
|
| Chrom. | Start | End | TF name | Source | Predicted site? | Tissue | TSS of gene | Distance between TFBS and gene | id | More |
|---|---|---|---|---|---|---|---|---|---|---|
| chr6 | 31541841 | 31542805 | POLR2A | UCSC Txn Factor | no | Conserved | 31539831 | 2010 | 108539602 | |
| chr6 | 31542401 | 31542412 | EBF1 | JASPAR | yes | 31539831 | 2570 | 70346081 | ||
| chr6 | 31542405 | 31542410 | TFAP2A | TRANSFAC | yes | 31539831 | 2574 | 70346082 | ||
| chr6 | 31542405 | 31542411 | MZF1 | JASPAR | yes | 31539831 | 2574 | 70346083 | ||
| chr6 | 31542432 | 31542452 | TP53 | JASPAR | yes | 31539831 | 2601 | 70346084 | ||
| chr6 | 31542463 | 31542476 | NFKB1 | JASPAR | yes | 31539831 | 2632 | 70346085 | ||
| chr6 | 31542464 | 31542469 | TFAP2A | TRANSFAC | yes | 31539831 | 2633 | 70346086 | ||
| chr6 | 31542464 | 31542470 | MZF1 | JASPAR | yes | 31539831 | 2633 | 70346087 | ||
| chr6 | 31542464 | 31542475 | NFKB1 | JASPAR | yes | 31539831 | 2633 | 70346088 | ||
| chr6 | 31542464 | 31542477 | NFKB1 | JASPAR | yes | 31539831 | 2633 | 70346089 | ||
| chr6 | 31542464 | 31542477 | NFKB2 | JASPAR | yes | 31539831 | 2633 | 70346090 | ||
| chr6 | 31542465 | 31542476 | NFKB1 | JASPAR | yes | 31539831 | 2634 | 70346091 | ||
| chr6 | 31542466 | 31542477 | NFKB1 | JASPAR | yes | 31539831 | 2635 | 70346092 | ||
| chr6 | 31542468 | 31542482 | GLIS3 | JASPAR | yes | 31539831 | 2637 | 70346093 | ||
| chr6 | 31542469 | 31542479 | ZNF740 | JASPAR | yes | 31539831 | 2638 | 70346094 | ||
| chr6 | 31542478 | 31542481 | MYB | TRANSFAC | yes | 31539831 | 2647 | 70346095 | ||
| chr6 | 31542485 | 31542506 | REST | JASPAR | yes | 31539831 | 2654 | 70346096 | ||
| chr6 | 31542489 | 31542506 | RARA | JASPAR | yes | 31539831 | 2658 | 70346097 | ||
| chr6 | 31542490 | 31542941 | RELA | UCSC Txn Factor | no | Conserved | 31539831 | 2659 | 108539603 | |
| chr6 | 31542499 | 31542514 | TFAP2C | JASPAR | yes | 31539831 | 2668 | 70346098 | ||
| chr6 | 31542501 | 31542515 | EBF1 | JASPAR | yes | 31539831 | 2670 | 70346099 | ||
| chr6 | 31542501 | 31542516 | TFAP2A | JASPAR | yes | 31539831 | 2670 | 70346100 | ||
| chr6 | 31542502 | 31542513 | EBF1 | JASPAR | yes | 31539831 | 2671 | 70346101 | ||
| chr6 | 31542503 | 31542512 | TFAP2A | JASPAR | yes | 31539831 | 2672 | 70346102 | ||
| chr6 | 31542508 | 31542523 | PRDM1 | JASPAR | yes | 31539831 | 2677 | 70346103 | ||
| chr6 | 31542535 | 31542544 | ZEB1 | JASPAR | yes | 31539831 | 2704 | 70346104 | ||
| chr6 | 31542581 | 31542586 | SP1 | TRANSFAC | yes | 31539831 | 2750 | 70346105 | ||
| chr6 | 31542589 | 31542604 | PRDM1 | JASPAR | yes | 31539831 | 2758 | 70346106 | ||
| chr6 | 31542594 | 31542833 | EBF1 | UCSC Txn Factor | no | Conserved | 31539831 | 2763 | 108539604 | |
| chr6 | 31542630 | 31542635 | ETS2 | TRANSFAC | yes | 31539831 | 2799 | 70346107 | ||
| chr6 | 31542638 | 31542659 | IRF1 | JASPAR | yes | 31539831 | 2807 | 70346108 | ||
| chr6 | 31542657 | 31542661 | YY1 | TRANSFAC | yes | 31539831 | 2826 | 70346109 | ||
| chr6 | 31542672 | 31542676 | ESR1 | TRANSFAC | yes | 31539831 | 2841 | 70346110 | ||
| chr6 | 31542679 | 31542685 | TCF4 | TRANSFAC | yes | 31539831 | 2848 | 70346111 | ||
| chr6 | 31542694 | 31542700 | NFE2 | TRANSFAC | yes | 31539831 | 2863 | 70346112 | ||
| chr6 | 31542711 | 31542721 | NFKB1 | JASPAR | yes | 31539831 | 2880 | 70346113 | ||
| chr6 | 31542711 | 31542721 | RELA | JASPAR | yes | 31539831 | 2880 | 70346114 | ||
| chr6 | 31542727 | 31542732 | H4TF1 | TRANSFAC | yes | 31539831 | 2896 | 70346115 | ||
| chr6 | 31542736 | 31542745 | TFAP2A | JASPAR | yes | 31539831 | 2905 | 70346116 | ||
| chr6 | 31542739 | 31542752 | NFKB2 | JASPAR | yes | 31539831 | 2908 | 70346117 | ||
| chr6 | 31542740 | 31542750 | NFKB1 | JASPAR | yes | 31539831 | 2909 | 70346118 | ||
| chr6 | 31542740 | 31542751 | NFKB1 | JASPAR | yes | 31539831 | 2909 | 70346119 | ||
| chr6 | 31542743 | 31542763 | TP53 | JASPAR | yes | 31539831 | 2912 | 70346120 | ||
| chr6 | 31542744 | 31542748 | NFE | TRANSFAC | yes | 31539831 | 2913 | 70346121 | ||
| chr6 | 31542778 | 31542793 | TFAP2A | JASPAR | yes | 31539831 | 2947 | 70346122 | ||
| chr6 | 31542803 | 31542813 | SP1 | JASPAR | yes | 31539831 | 2972 | 70346123 |
| Chrom. | Position | dbSNP ID | Reference Allele | Alternative Allele | Distance between TSS and SNP | Tissue | q Value | id | More |
|---|---|---|---|---|---|---|---|---|---|
| chr6 | 31319222 | rs9266059 | C | T | 220609 | Esophagus | 0.226041 | 8955984 | |
| chr6 | 31427231 | rs2254620 | G | A | 112600 | Heart | 0.180272 | 8957208 | |
| chr6 | 31461795 | rs2395041 | C | A | 78036 | Ovary | 0.296917 | 8957795 | |
| chr6 | 31560910 | rs2736191 | C | G | 18809 | Uterus | 0.429778 | 8958451 | |
| chr6 | 30744529 | rs11757629 | A | C | 795302 | Stomach | 0.321037 | 8948820 |
| Genomic Location | chr6:31539831-31542101[+] |
| TSS | 31539831 |
| Gene Name | LTA |
| Ensembl ID | ENSG00000226979.4 |
| ENTREZID | 4049 |
| Uniprot | |
| Q5STV3 | |
| P01374 | |
| Protein Name | |
| LTA | |
| Lymphotoxin alpha | |
| Lymphotoxin alpha transcript variant 2 | |
| Lymphotoxin alpha transcript variant 3 | |
| Lymphotoxin alpha transcript variant 4 | |
| Lymphotoxin alpha transcript variant 5 | |
| Lymphotoxin alpha transcript variant 6 | |
| Lymphotoxin alpha transcript variant 7 | |
| Lymphotoxin alpha transcript variant 8 | |
| Lymphotoxin-alpha |