EnhancerDB
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  3. vista25345[chr17:57839956-57840355]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25345[chr17:57839956-57840355]
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Tissue distribution of vista25345
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Transcription factor that possibly regulate vista25345[chr17:57839956-57840355]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 57839944 57840132 RUNX3 UCSC Txn Factor no Conserved 108276700
chr17 57839961 57839967 SOX10 JASPAR yes 21265136
chr17 57839961 57839967 SOX10 JASPAR yes 55078919
chr17 57839965 57839979 STAT1 JASPAR yes 21265137
chr17 57839965 57839979 STAT1 JASPAR yes 55078920
chr17 57839965 57839980 STAT2 JASPAR yes 21265138
chr17 57839965 57839980 STAT2 JASPAR yes 55078921
chr17 57839992 57839996 YY1 TRANSFAC yes 21265139
chr17 57839992 57839996 YY1 TRANSFAC yes 55078922
chr17 57840003 57840015 ZBTB7C JASPAR yes 21265140
chr17 57840003 57840015 ZBTB7C JASPAR yes 55078923
chr17 57840010 57840023 ZBTB18 JASPAR yes 21265141
chr17 57840010 57840023 ZBTB18 JASPAR yes 55078924
chr17 57840017 57840030 TFAP2A JASPAR yes 21265142
chr17 57840017 57840030 TFAP2B JASPAR yes 21265143
chr17 57840017 57840030 TFAP2C JASPAR yes 21265144
chr17 57840017 57840030 TFAP2A JASPAR yes 55078925
chr17 57840017 57840030 TFAP2B JASPAR yes 55078926
chr17 57840017 57840030 TFAP2C JASPAR yes 55078927
chr17 57840022 57840043 MAFG JASPAR yes 21265145
chr17 57840022 57840043 MAFG JASPAR yes 55078928
chr17 57840023 57840037 JUN JASPAR yes 21265146
chr17 57840023 57840037 JUN JASPAR yes 55078929
chr17 57840026 57840037 NFE2L2 JASPAR yes 21265147
chr17 57840026 57840037 NFE2L2 JASPAR yes 55078930
chr17 57840027 57840038 JUND JASPAR yes 21265148
chr17 57840027 57840038 JUND JASPAR yes 55078931
chr17 57840029 57840035 JUN TRANSFAC yes 21265149
chr17 57840029 57840035 JUN TRANSFAC yes 55078932
chr17 57840047 57840058 RUNX1 JASPAR yes 21265150
chr17 57840047 57840058 RUNX1 JASPAR yes 55078933
chr17 57840054 57840067 POU3F3 JASPAR yes 21265151
chr17 57840054 57840067 POU3F3 JASPAR yes 55078934
chr17 57840055 57840067 POU3F1 JASPAR yes 21265152
chr17 57840055 57840067 POU3F2 JASPAR yes 21265153
chr17 57840055 57840067 POU3F1 JASPAR yes 55078935
chr17 57840055 57840067 POU3F2 JASPAR yes 55078936
chr17 57840056 57840066 NFATC3 JASPAR yes 21265154
chr17 57840056 57840066 NFATC3 JASPAR yes 55078937
chr17 57840058 57840065 NFATC2 JASPAR yes 21265155
chr17 57840058 57840065 NFATC2 JASPAR yes 55078938
chr17 57840063 57840073 NEUROG2 JASPAR yes 21265156
chr17 57840063 57840073 NEUROG2 JASPAR yes 55078939
chr17 57840161 57840176 PRDM1 JASPAR yes 21265157
chr17 57840161 57840176 PRDM1 JASPAR yes 55078940
chr17 57840180 57840183 MYB TRANSFAC yes 21265158
chr17 57840180 57840183 MYB TRANSFAC yes 55078941
chr17 57840180 57840195 MEF2C JASPAR yes 21265159
chr17 57840180 57840195 MEF2C JASPAR yes 55078942
chr17 57840180 57840201 IRF1 JASPAR yes 21265160
chr17 57840180 57840201 IRF1 JASPAR yes 55078943
chr17 57840182 57840194 MEF2D JASPAR yes 21265161
chr17 57840182 57840194 MEF2D JASPAR yes 55078944
chr17 57840182 57840197 IRF9 JASPAR yes 21265162
chr17 57840182 57840197 IRF9 JASPAR yes 55078945
chr17 57840183 57840197 IRF7 JASPAR yes 21265163
chr17 57840183 57840197 IRF7 JASPAR yes 55078946
chr17 57840184 57840202 IRF2 JASPAR yes 21265164
chr17 57840184 57840202 IRF2 JASPAR yes 55078947
chr17 57840185 57840197 IRF1 JASPAR yes 21265165
chr17 57840185 57840197 IRF1 JASPAR yes 55078948
chr17 57840185 57840200 STAT2 JASPAR yes 21265166
chr17 57840185 57840200 STAT2 JASPAR yes 55078949
chr17 57840196 57840206 MEF2A JASPAR yes 21265167
chr17 57840196 57840206 MEF2A JASPAR yes 55078950
chr17 57840197 57840201 TEAD2 TRANSFAC yes 21265168
chr17 57840197 57840201 TEAD2 TRANSFAC yes 55078951
chr17 57840197 57840202 TBP TRANSFAC yes 21265169
chr17 57840197 57840202 TBP TRANSFAC yes 55078952
chr17 57840205 57840219 IRF7 JASPAR yes 21265170
chr17 57840205 57840219 IRF7 JASPAR yes 55078953
chr17 57840210 57840214 YY1 TRANSFAC yes 21265171
chr17 57840210 57840214 YY1 TRANSFAC yes 55078954
chr17 57840211 57840221 HOXA13 JASPAR yes 21265172
chr17 57840211 57840221 HOXB13 JASPAR yes 21265173
chr17 57840211 57840221 HOXD13 JASPAR yes 21265174
chr17 57840211 57840221 HOXA13 JASPAR yes 55078955
chr17 57840211 57840221 HOXB13 JASPAR yes 55078956
chr17 57840211 57840221 HOXD13 JASPAR yes 55078957
chr17 57840211 57840222 HOXA10 JASPAR yes 21265175
chr17 57840211 57840222 HOXA10 JASPAR yes 55078958
chr17 57840212 57840221 CDX1 JASPAR yes 21265176
chr17 57840212 57840221 CDX1 JASPAR yes 55078959
chr17 57840212 57840223 CDX2 JASPAR yes 21265177
chr17 57840212 57840223 CDX2 JASPAR yes 55078960
chr17 57840219 57840224 GATA2 JASPAR yes 21265178
chr17 57840219 57840224 GATA2 JASPAR yes 55078961
chr17 57840222 57840233 PROP1 JASPAR yes 21265179
chr17 57840222 57840233 PROP1 JASPAR yes 55078962
chr17 57840239 57840250 DMRT3 JASPAR yes 21265180
chr17 57840239 57840250 DMRT3 JASPAR yes 55078963
chr17 57840241 57840246 GATA2 JASPAR yes 21265181
chr17 57840241 57840246 GATA2 JASPAR yes 55078964
chr17 57840243 57840257 POU4F1 JASPAR yes 21265182
chr17 57840243 57840257 POU4F1 JASPAR yes 55078965
chr17 57840243 57840259 POU4F3 JASPAR yes 21265183
chr17 57840243 57840259 POU4F3 JASPAR yes 55078966
chr17 57840246 57840250 YY1 TRANSFAC yes 21265184
chr17 57840246 57840250 YY1 TRANSFAC yes 55078967
chr17 57840246 57840261 FOXP1 JASPAR yes 21265185
chr17 57840246 57840261 FOXP1 JASPAR yes 55078968
chr17 57840251 57840266 MEF2A JASPAR yes 21265186
chr17 57840251 57840266 MEF2A JASPAR yes 55078969
chr17 57840252 57840267 MEF2C JASPAR yes 21265187
chr17 57840252 57840267 MEF2C JASPAR yes 55078970
chr17 57840255 57840259 YY1 TRANSFAC yes 21265188
chr17 57840255 57840259 YY1 TRANSFAC yes 55078971
chr17 57840260 57840270 TEAD1 JASPAR yes 21265189
chr17 57840260 57840270 TEAD4 JASPAR yes 21265190
chr17 57840260 57840270 TEAD1 JASPAR yes 55078972
chr17 57840260 57840270 TEAD4 JASPAR yes 55078973
chr17 57840261 57840269 TEAD3 JASPAR yes 21265191
chr17 57840261 57840269 TEAD3 JASPAR yes 55078974
chr17 57840262 57840275 POU3F3 JASPAR yes 21265192
chr17 57840262 57840275 POU3F3 JASPAR yes 55078975
chr17 57840263 57840274 FOXA1 JASPAR yes 21265193
chr17 57840263 57840274 FOXA1 JASPAR yes 55078976
chr17 57840263 57840275 POU3F1 JASPAR yes 21265194
chr17 57840263 57840275 POU3F2 JASPAR yes 21265195
chr17 57840263 57840275 POU3F1 JASPAR yes 55078977
chr17 57840263 57840275 POU3F2 JASPAR yes 55078978
chr17 57840263 57840276 POU2F2 JASPAR yes 21265196
chr17 57840263 57840276 POU2F2 JASPAR yes 55078979
chr17 57840263 57840278 FOXA1 JASPAR yes 21265197
chr17 57840263 57840278 FOXA1 JASPAR yes 55078980
chr17 57840264 57840273 POU3F4 JASPAR yes 21265198
chr17 57840264 57840273 POU5F1B JASPAR yes 21265199
chr17 57840264 57840273 POU3F4 JASPAR yes 55078981
chr17 57840264 57840273 POU5F1B JASPAR yes 55078982
chr17 57840264 57840275 FOXB1 JASPAR yes 21265200
chr17 57840264 57840275 FOXC1 JASPAR yes 21265201
chr17 57840264 57840275 FOXB1 JASPAR yes 55078983
chr17 57840264 57840275 FOXC1 JASPAR yes 55078984
chr17 57840264 57840276 FOXC2 JASPAR yes 21265202
chr17 57840264 57840276 FOXC2 JASPAR yes 55078985
chr17 57840265 57840272 POU2F1 TRANSFAC yes 21265203
chr17 57840265 57840272 POU2F2 TRANSFAC yes 21265204
chr17 57840265 57840272 POU2F1 TRANSFAC yes 55078986
chr17 57840265 57840272 POU2F2 TRANSFAC yes 55078987
chr17 57840265 57840280 MEF2A JASPAR yes 21265205
chr17 57840265 57840280 MEF2A JASPAR yes 55078988
chr17 57840271 57840289 IRF2 JASPAR yes 21265206
chr17 57840271 57840289 IRF2 JASPAR yes 55078989
chr17 57840272 57840293 IRF1 JASPAR yes 21265207
chr17 57840272 57840293 IRF1 JASPAR yes 55078990
chr17 57840274 57840289 PRDM1 JASPAR yes 21265208
chr17 57840274 57840289 STAT2 JASPAR yes 21265209
chr17 57840274 57840289 PRDM1 JASPAR yes 55078991
chr17 57840274 57840289 STAT2 JASPAR yes 55078992
chr17 57840288 57840292 NFE TRANSFAC yes 21265210
chr17 57840288 57840292 NFE TRANSFAC yes 55078993
chr17 57840288 57840293 GATA1 TRANSFAC yes 21265211
chr17 57840288 57840293 GATA1 TRANSFAC yes 55078994
chr17 57840288 57840294 GATA3 JASPAR yes 21265212
chr17 57840288 57840294 GATA3 JASPAR yes 55078995
chr17 57840292 57840296 NFE TRANSFAC yes 21265213
chr17 57840292 57840296 NFE TRANSFAC yes 55078996
chr17 57840293 57840298 GATA2 JASPAR yes 21265214
chr17 57840293 57840298 GATA2 JASPAR yes 55078997
chr17 57840301 57840312 PHOX2A JASPAR yes 21265215
chr17 57840301 57840312 PROP1 JASPAR yes 21265216
chr17 57840301 57840312 PHOX2A JASPAR yes 55078998
chr17 57840301 57840312 PROP1 JASPAR yes 55078999
chr17 57840303 57840313 POU6F2 JASPAR yes 21265217
chr17 57840303 57840313 POU6F2 JASPAR yes 55079000
chr17 57840307 57840311 YY1 TRANSFAC yes 21265218
chr17 57840307 57840311 YY1 TRANSFAC yes 55079001
chr17 57840310 57840314 YY1 TRANSFAC yes 21265219
chr17 57840310 57840314 YY1 TRANSFAC yes 55079002
chr17 57840328 57840343 MEF2A JASPAR yes 21265220
chr17 57840328 57840343 MEF2A JASPAR yes 55079003
chr17 57840329 57840344 MEF2C JASPAR yes 21265221
chr17 57840329 57840344 MEF2C JASPAR yes 55079004
chr17 57840332 57840336 YY1 TRANSFAC yes 21265222
chr17 57840332 57840336 YY1 TRANSFAC yes 55079005
chr17 57840335 57840341 TCF4 TRANSFAC yes 21265223
chr17 57840335 57840341 TCF4 TRANSFAC yes 55079006
chr17 57840353 57840357 YY1 TRANSFAC yes 21265224
chr17 57840353 57840357 YY1 TRANSFAC yes 55079007
SNP sites on vista25345[chr17:57839956-57840355]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 57840086 rs538581198 T C
RUNX3
4961546
chr17 57840123 rs149427126 A G
RUNX3
4961547
chr17 57840129 rs183221624 G T
RUNX3
4961548
chr17 57840130 rs549210879 A G
RUNX3
4961549
chr17 57840217 rs146033506 AT A
CDX1 CDX2 HOXA10 HOXA13 HOXB13 HOXD13 IRF7
4961550
chr17 57840291 rs140107992 A G
GATA1 GATA3 IRF1 NFE
4961551
chr17 57840292 rs188819156 T C
GATA1 GATA3 IRF1 NFE
4961552
Genes possibly regulated by vista25345[chr17:57839956-57840355]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 57751997 57784987 - PTRH2 ENSG00000141378.13 57784987 0.88 1.0 16105 45031
chr17 57784553 57919616 + VMP1 ENSG00000062716.6 57784553 0.71 0.99 16106 44597
Expression level of Genes
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miRNAs possibly regulated by vista25345[chr17:57839956-57840355]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr17 57918672 57918692 + hsa-miR-21-3p MIMAT0004494 57915291 0.02171125013834005 0.710898 0.678791 730
Expression level of miRNAs
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