EnhancerDB
  1. Home
  2. Enhancers
  3. vista40161[chr3:16550067-16550455]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista40161[chr3:16550067-16550455]
Back to top
Tissue distribution of vista40161
Back to top
Transcription factor that possibly regulate vista40161[chr3:16550067-16550455]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528470
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528471
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528472
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528473
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528474
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528475
chr3 16548942 16558839 POLR2A UCSC Txn Factor no Conserved 108528476
chr3 16549978 16550493 EBF1 UCSC Txn Factor no Conserved 108528477
chr3 16550038 16550610 NFIC UCSC Txn Factor no Conserved 108528478
chr3 16550149 16550606 RUNX3 UCSC Txn Factor no Conserved 108528479
chr3 16550066 16550082 POU4F3 JASPAR yes 735973
chr3 16550066 16550082 POU4F3 JASPAR yes 70946914
chr3 16550067 16550071 H1TF2 TRANSFAC yes 735974
chr3 16550067 16550071 NFE TRANSFAC yes 735975
chr3 16550067 16550071 SRF TRANSFAC yes 735976
chr3 16550067 16550071 H1TF2 TRANSFAC yes 70946915
chr3 16550067 16550071 NFE TRANSFAC yes 70946916
chr3 16550067 16550071 SRF TRANSFAC yes 70946917
chr3 16550072 16550082 HOXA13 JASPAR yes 735977
chr3 16550072 16550082 HOXB13 JASPAR yes 735978
chr3 16550072 16550082 HOXC10 JASPAR yes 735979
chr3 16550072 16550082 HOXD11 JASPAR yes 735980
chr3 16550072 16550082 HOXD13 JASPAR yes 735981
chr3 16550072 16550082 HOXA13 JASPAR yes 70946918
chr3 16550072 16550082 HOXB13 JASPAR yes 70946919
chr3 16550072 16550082 HOXC10 JASPAR yes 70946920
chr3 16550072 16550082 HOXD11 JASPAR yes 70946921
chr3 16550072 16550082 HOXD13 JASPAR yes 70946922
chr3 16550072 16550083 HOXA10 JASPAR yes 735982
chr3 16550072 16550083 HOXC11 JASPAR yes 735983
chr3 16550072 16550083 HOXC13 JASPAR yes 735984
chr3 16550072 16550083 HOXA10 JASPAR yes 70946923
chr3 16550072 16550083 HOXC11 JASPAR yes 70946924
chr3 16550072 16550083 HOXC13 JASPAR yes 70946925
chr3 16550073 16550082 CDX1 JASPAR yes 735985
chr3 16550073 16550082 CDX1 JASPAR yes 70946926
chr3 16550074 16550085 STAT1 JASPAR yes 735986
chr3 16550074 16550085 STAT1 JASPAR yes 70946927
chr3 16550087 16550105 TP63 JASPAR yes 735987
chr3 16550087 16550105 TP73 JASPAR yes 735988
chr3 16550087 16550105 TP63 JASPAR yes 70946928
chr3 16550087 16550105 TP73 JASPAR yes 70946929
chr3 16550090 16550106 POU4F3 JASPAR yes 735989
chr3 16550090 16550106 POU4F3 JASPAR yes 70946930
chr3 16550104 16550113 POU3F4 JASPAR yes 735990
chr3 16550104 16550113 POU5F1B JASPAR yes 735991
chr3 16550104 16550113 POU3F4 JASPAR yes 70946931
chr3 16550104 16550113 POU5F1B JASPAR yes 70946932
chr3 16550109 16550127 IRF2 JASPAR yes 735992
chr3 16550109 16550127 IRF2 JASPAR yes 70946933
chr3 16550110 16550122 IRF1 JASPAR yes 735993
chr3 16550110 16550122 IRF1 JASPAR yes 70946934
chr3 16550114 16550120 TCF4 TRANSFAC yes 735994
chr3 16550114 16550120 TCF4 TRANSFAC yes 70946935
chr3 16550121 16550135 PLAG1 JASPAR yes 735995
chr3 16550121 16550135 PLAG1 JASPAR yes 70946936
chr3 16550128 16550133 SP1 TRANSFAC yes 735996
chr3 16550128 16550133 SP1 TRANSFAC yes 70946937
chr3 16550131 16550142 EBF1 JASPAR yes 735997
chr3 16550131 16550142 EBF1 JASPAR yes 70946938
chr3 16550153 16550165 BHLHE23 JASPAR yes 735998
chr3 16550153 16550165 BHLHE23 JASPAR yes 70946939
chr3 16550154 16550164 BHLHE22 JASPAR yes 735999
chr3 16550154 16550164 NEUROD2 JASPAR yes 736000
chr3 16550154 16550164 NEUROG2 JASPAR yes 736001
chr3 16550154 16550164 BHLHE22 JASPAR yes 70946940
chr3 16550154 16550164 NEUROD2 JASPAR yes 70946941
chr3 16550154 16550164 NEUROG2 JASPAR yes 70946942
chr3 16550160 16550181 IRF1 JASPAR yes 736002
chr3 16550160 16550181 IRF1 JASPAR yes 70946943
chr3 16550166 16550187 IRF1 JASPAR yes 736003
chr3 16550166 16550187 IRF1 JASPAR yes 70946944
chr3 16550183 16550188 ETS2 TRANSFAC yes 736004
chr3 16550183 16550188 ETS2 TRANSFAC yes 70946945
chr3 16550188 16550196 NR4A2 JASPAR yes 736005
chr3 16550188 16550196 NR4A2 JASPAR yes 70946946
chr3 16550199 16550219 RREB1 JASPAR yes 736006
chr3 16550199 16550219 RREB1 JASPAR yes 70946947
chr3 16550201 16550221 RREB1 JASPAR yes 736007
chr3 16550201 16550221 RREB1 JASPAR yes 70946948
chr3 16550203 16550223 RREB1 JASPAR yes 736008
chr3 16550203 16550223 RREB1 JASPAR yes 70946949
chr3 16550205 16550225 RREB1 JASPAR yes 736009
chr3 16550205 16550225 RREB1 JASPAR yes 70946950
chr3 16550207 16550227 RREB1 JASPAR yes 736010
chr3 16550207 16550227 RREB1 JASPAR yes 70946951
chr3 16550209 16550229 RREB1 JASPAR yes 736011
chr3 16550209 16550229 RREB1 JASPAR yes 70946952
chr3 16550211 16550231 RREB1 JASPAR yes 736012
chr3 16550211 16550231 RREB1 JASPAR yes 70946953
chr3 16550213 16550233 RREB1 JASPAR yes 736013
chr3 16550213 16550233 RREB1 JASPAR yes 70946954
chr3 16550227 16550245 SRF JASPAR yes 736014
chr3 16550227 16550245 SRF JASPAR yes 70946955
chr3 16550236 16550250 FOXF2 JASPAR yes 736015
chr3 16550236 16550250 FOXF2 JASPAR yes 70946956
chr3 16550236 16550251 FOXP1 JASPAR yes 736016
chr3 16550236 16550251 FOXP1 JASPAR yes 70946957
chr3 16550237 16550248 FOXA1 JASPAR yes 736017
chr3 16550237 16550248 FOXA1 JASPAR yes 70946958
chr3 16550237 16550252 FOXA1 JASPAR yes 736018
chr3 16550237 16550252 FOXA1 JASPAR yes 70946959
chr3 16550238 16550250 FOXC2 JASPAR yes 736019
chr3 16550238 16550250 FOXC2 JASPAR yes 70946960
chr3 16550239 16550250 FOXP2 JASPAR yes 736020
chr3 16550239 16550250 FOXP2 JASPAR yes 70946961
chr3 16550240 16550248 FOXO3 JASPAR yes 736021
chr3 16550240 16550248 FOXO3 JASPAR yes 70946962
chr3 16550241 16550248 FOXD2 JASPAR yes 736022
chr3 16550241 16550248 FOXI1 JASPAR yes 736023
chr3 16550241 16550248 FOXL1 JASPAR yes 736024
chr3 16550241 16550248 FOXO4 JASPAR yes 736025
chr3 16550241 16550248 FOXO6 JASPAR yes 736026
chr3 16550241 16550248 FOXP3 JASPAR yes 736027
chr3 16550241 16550248 FOXD2 JASPAR yes 70946963
chr3 16550241 16550248 FOXI1 JASPAR yes 70946964
chr3 16550241 16550248 FOXL1 JASPAR yes 70946965
chr3 16550241 16550248 FOXO4 JASPAR yes 70946966
chr3 16550241 16550248 FOXO6 JASPAR yes 70946967
chr3 16550241 16550248 FOXP3 JASPAR yes 70946968
chr3 16550241 16550249 FOXD1 JASPAR yes 736028
chr3 16550241 16550249 FOXG1 JASPAR yes 736029
chr3 16550241 16550249 FOXO3 JASPAR yes 736030
chr3 16550241 16550249 FOXD1 JASPAR yes 70946969
chr3 16550241 16550249 FOXG1 JASPAR yes 70946970
chr3 16550241 16550249 FOXO3 JASPAR yes 70946971
chr3 16550243 16550249 HiNF-A TRANSFAC yes 736031
chr3 16550243 16550249 HiNF-A TRANSFAC yes 70946972
chr3 16550253 16550265 TAL1 JASPAR yes 736032
chr3 16550253 16550265 TAL1 JASPAR yes 70946973
chr3 16550254 16550267 ZBTB18 JASPAR yes 736033
chr3 16550254 16550267 ZBTB18 JASPAR yes 70946974
chr3 16550255 16550265 NEUROG2 JASPAR yes 736034
chr3 16550255 16550265 NEUROG2 JASPAR yes 70946975
chr3 16550267 16550278 DMRT3 JASPAR yes 736035
chr3 16550267 16550278 DMRT3 JASPAR yes 70946976
chr3 16550271 16550276 GATA2 JASPAR yes 736036
chr3 16550271 16550276 GATA2 JASPAR yes 70946977
chr3 16550276 16550282 SOX10 JASPAR yes 736037
chr3 16550276 16550282 SOX10 JASPAR yes 70946978
chr3 16550289 16550303 SPI1 JASPAR yes 736038
chr3 16550289 16550303 SPI1 JASPAR yes 70946979
chr3 16550319 16550323 H1TF2 TRANSFAC yes 736039
chr3 16550319 16550323 NFE TRANSFAC yes 736040
chr3 16550319 16550323 SRF TRANSFAC yes 736041
chr3 16550319 16550323 H1TF2 TRANSFAC yes 70946980
chr3 16550319 16550323 NFE TRANSFAC yes 70946981
chr3 16550319 16550323 SRF TRANSFAC yes 70946982
chr3 16550333 16550348 FOXP1 JASPAR yes 736042
chr3 16550333 16550348 FOXP1 JASPAR yes 70946983
chr3 16550339 16550345 TBP TRANSFAC yes 736043
chr3 16550339 16550345 TBP TRANSFAC yes 70946984
chr3 16550340 16550355 FOXP1 JASPAR yes 736044
chr3 16550340 16550355 FOXP1 JASPAR yes 70946985
chr3 16550348 16550363 RUNX2 JASPAR yes 736045
chr3 16550348 16550363 RUNX2 JASPAR yes 70946986
chr3 16550365 16550369 NFE TRANSFAC yes 736046
chr3 16550365 16550369 NFE TRANSFAC yes 70946987
chr3 16550365 16550372 MEIS1 JASPAR yes 736047
chr3 16550365 16550372 MEIS1 JASPAR yes 70946988
chr3 16550384 16550397 JUN JASPAR yes 736048
chr3 16550384 16550397 JUN JASPAR yes 70946989
chr3 16550387 16550398 CEBPB JASPAR yes 736049
chr3 16550387 16550398 CEBPB JASPAR yes 70946990
chr3 16550399 16550403 NFE TRANSFAC yes 736050
chr3 16550399 16550403 NFE TRANSFAC yes 70946991
chr3 16550399 16550404 GATA1 TRANSFAC yes 736051
chr3 16550399 16550404 GATA1 TRANSFAC yes 70946992
chr3 16550399 16550405 GATA3 JASPAR yes 736052
chr3 16550399 16550405 GATA3 JASPAR yes 70946993
chr3 16550408 16550412 NFE TRANSFAC yes 736053
chr3 16550408 16550412 NFE TRANSFAC yes 70946994
chr3 16550409 16550414 GATA2 JASPAR yes 736054
chr3 16550409 16550414 GATA2 JASPAR yes 70946995
chr3 16550412 16550416 H1TF2 TRANSFAC yes 736055
chr3 16550412 16550416 NFE TRANSFAC yes 736056
chr3 16550412 16550416 SRF TRANSFAC yes 736057
chr3 16550412 16550416 H1TF2 TRANSFAC yes 70946996
chr3 16550412 16550416 NFE TRANSFAC yes 70946997
chr3 16550412 16550416 SRF TRANSFAC yes 70946998
chr3 16550428 16550431 MYB TRANSFAC yes 736058
chr3 16550428 16550431 MYB TRANSFAC yes 70946999
chr3 16550431 16550443 HES5 JASPAR yes 736059
chr3 16550431 16550443 HES5 JASPAR yes 70947000
chr3 16550432 16550442 CLOCK JASPAR yes 736060
chr3 16550432 16550442 HEY1 JASPAR yes 736061
chr3 16550432 16550442 HEY2 JASPAR yes 736062
chr3 16550432 16550442 MAX JASPAR yes 736063
chr3 16550432 16550442 CLOCK JASPAR yes 70947001
chr3 16550432 16550442 HEY1 JASPAR yes 70947002
chr3 16550432 16550442 HEY2 JASPAR yes 70947003
chr3 16550432 16550442 MAX JASPAR yes 70947004
chr3 16550433 16550443 MAX JASPAR yes 736064
chr3 16550433 16550443 MAX JASPAR yes 70947005
chr3 16550434 16550439 MYC TRANSFAC yes 736065
chr3 16550434 16550439 USF1 TRANSFAC yes 736066
chr3 16550434 16550439 USF2 TRANSFAC yes 736067
chr3 16550434 16550439 MYC TRANSFAC yes 70947006
chr3 16550434 16550439 USF1 TRANSFAC yes 70947007
chr3 16550434 16550439 USF2 TRANSFAC yes 70947008
chr3 16550434 16550441 USF1 JASPAR yes 736068
chr3 16550434 16550441 USF1 JASPAR yes 70947009
chr3 16550437 16550451 TLX1 JASPAR yes 736069
chr3 16550437 16550451 TLX1 JASPAR yes 70947010
chr3 16550438 16550452 TLX1 JASPAR yes 736070
chr3 16550438 16550452 TLX1 JASPAR yes 70947011
chr3 16550447 16550457 NKX2-3 JASPAR yes 736071
chr3 16550447 16550457 NKX2-3 JASPAR yes 70947012
chr3 16550448 16550457 NKX2-8 JASPAR yes 736072
chr3 16550448 16550457 NKX2-8 JASPAR yes 70947013
SNP sites on vista40161[chr3:16550067-16550455]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 16550164 rs144288205 CA C
BHLHE22 BHLHE23 EBF1 IRF1 NEUROD2 NEUROG2 NFIC POLR2A RUNX3
6582498
chr3 16550195 rs10558755 ACACG A
EBF1 NFIC NR4A2 POLR2A RUNX3
6582499
chr3 16550195 rs59865038 ACACG A
EBF1 NFIC NR4A2 POLR2A RUNX3
6582500
chr3 16550195 rs776183697 ACACG A
EBF1 NFIC NR4A2 POLR2A RUNX3
6582501
chr3 16550201 rs113943168 ACG A
EBF1 NFIC POLR2A RREB1 RUNX3
6582502
chr3 16550201 rs57822813 ACG A
EBF1 NFIC POLR2A RREB1 RUNX3
6582503
chr3 16550205 rs11928652 A G
EBF1 NFIC POLR2A RREB1 RUNX3
6582504
chr3 16550341 rs546934395 A G,T
EBF1 FOXP1 NFIC POLR2A RUNX3 TBP
6582505
chr3 16550441 rs143393274 G T
CLOCK EBF1 HES5 HEY1 HEY2 MAX NFIC POLR2A RUNX3 TLX1 USF1
6582506
Genes possibly regulated by vista40161[chr3:16550067-16550455]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 16355081 16555533 - RFTN1 ENSG00000131378.9 16555533 0.73 0.99 3452 94922
Expression level of Genes
Back to top
miRNAs possibly regulated by vista40161[chr3:16550067-16550455]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
Back to top
No results