EnhancerDB
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  3. rs10798625[chr1:178633373]
Enhancers that have rs10798625[chr1:178633373]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 178606845 178636895 enh759
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Large Intestine Ovary Esophagus Astrocyte Blood (OCI-LY7) Stomach Placenta Blood (Karpas-422) Lung (PC-9) Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs10798625[chr1:178633373]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 178632462 178633536 P63 GTRD no Skin (Keratinocyte) 21352892
chr1 178632652 178633587 P63 GTRD no Skin (Keratinocyte) 21352893
chr1 178632681 178633588 P63 GTRD no Skin (Keratinocyte) 21352894
chr1 178633361 178633373 HNF1B JASPAR yes 33435627
chr1 178633365 178633385 ESR1 JASPAR yes 33435628
chr1 178633368 178633386 ESR2 JASPAR yes 33435629
chr1 178633368 178633388 PPARG JASPAR yes 33435630
chr1 178633369 178633375 ESR1 TRANSFAC yes 33435631
chr1 178633369 178633387 ESR2 JASPAR yes 33435632
chr1 178633370 178633385 ESR2 JASPAR yes 33435633
chr1 178633370 178633390 ESR1 JASPAR yes 33435634
chr1 178633371 178633375 ESR1 TRANSFAC yes 33435635
Genes associated with rs10798625[chr1:178633373], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 178694300 178889238 + RALGPS2 ENSG00000116191.13 178694300 60927 Esophagus 0.00852691 1602