EnhancerDB
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  3. rs111678841[chr19:2573553]
Enhancers that have rs111678841[chr19:2573553]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2555465 2582297 enh17850
Astrocyte Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Brain (SK-N-SH) Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung
Transcript factors that have rs111678841[chr19:2573553]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2573543 2573556 SMAD2 JASPAR yes 112076888
chr19 2573546 2573556 TBR1 JASPAR yes 112076889
chr19 2573547 2573557 TBX21 JASPAR yes 112076890
chr19 2573548 2573556 MGA JASPAR yes 112076891
chr19 2573548 2573556 TBX15 JASPAR yes 112076892
chr19 2573548 2573556 TBX1 JASPAR yes 112076893
chr19 2573548 2573556 TBX4 JASPAR yes 112076894
chr19 2573548 2573556 TBX5 JASPAR yes 112076895
chr19 2573548 2573557 ZEB1 JASPAR yes 112076896
chr19 2573548 2573560 PKNOX1 JASPAR yes 112076897
chr19 2573548 2573560 TGIF1 JASPAR yes 112076898
chr19 2573548 2573561 ZBTB18 JASPAR yes 112076899
chr19 2573549 2573559 FIGLA JASPAR yes 112076900
chr19 2573549 2573559 ID4 JASPAR yes 112076901
chr19 2573549 2573559 TCF3 JASPAR yes 112076902
chr19 2573549 2573559 TCF4 JASPAR yes 112076903
chr19 2573550 2573559 SNAI2 JASPAR yes 112076904
chr19 2573551 2573556 USF2 TRANSFAC yes 112076905
Genes associated with rs111678841[chr19:2573553], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More