EnhancerDB
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  3. rs112558029[chr17:1896412]
Enhancers that have rs112558029[chr17:1896412]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 1888491 1923135 enh16929
Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs112558029[chr17:1896412]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 1896393 1896412 REST JASPAR yes 52713945
chr17 1896411 1896421 ID4 JASPAR yes 52713948
chr17 1896411 1896421 TCF3 JASPAR yes 52713949
chr17 1896411 1896421 TCF4 JASPAR yes 52713950
chr17 1896412 1896421 SNAI2 JASPAR yes 52713951
Genes associated with rs112558029[chr17:1896412], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More