EnhancerDB
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  3. rs113253827[chr12:52541612]
Enhancers that have rs113253827[chr12:52541612]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs113253827[chr12:52541612]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033122
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033123
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033124
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033125
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546373
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033126
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033127
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033128
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033129
chr12 52541006 52541666 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546387
chr12 52541006 52541666 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033148
chr12 52541016 52541649 EP300 UCSC Txn Factor no Conserved 108033149
chr12 52541016 52541649 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033150
chr12 52541017 52541667 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546388
chr12 52541017 52541667 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033151
chr12 52541073 52541625 TCF12 UCSC Txn Factor no Conserved 108033154
chr12 52541073 52541625 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033155
chr12 52541110 52541734 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108033165
chr12 52541177 52541633 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546407
chr12 52541177 52541633 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033193
chr12 52541195 52542449 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546410
chr12 52541195 52542449 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033199
chr12 52541195 52542449 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033200
chr12 52541217 52541877 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546413
chr12 52541217 52541877 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033206
chr12 52541222 52542932 ZBTB33 GTRD no Lung (A549) 108033207
chr12 52541222 52542932 ZBTB33 GTRD no Lung (A549) 108033208
chr12 52541279 52541763 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033212
chr12 52541290 52541773 ZNF143 GTRD no Epithelial (MCF-7) 21546416
chr12 52541290 52541773 ZNF143 GTRD no Epithelial (MCF-7) 108033213
chr12 52541293 52541643 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033216
chr12 52541299 52542654 P63 GTRD no Skin (Keratinocyte) 21546417
chr12 52541299 52542654 P63 GTRD no Skin (Keratinocyte) 108033217
chr12 52541299 52542654 P63 GTRD no Skin (Keratinocyte) 108033218
chr12 52541301 52541621 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546418
chr12 52541301 52541621 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033219
chr12 52541311 52541760 ZNF143 GTRD no Epithelial (MCF-7) 21546419
chr12 52541311 52541760 ZNF143 GTRD no Epithelial (MCF-7) 108033220
chr12 52541364 52541759 ZNF143 GTRD no Epithelial (MCF-7) 21546420
chr12 52541364 52541759 ZNF143 GTRD no Epithelial (MCF-7) 108033221
chr12 52541388 52542783 P63 GTRD no Skin (Keratinocyte) 21546421
chr12 52541388 52542783 P63 GTRD no Skin (Keratinocyte) 108033222
chr12 52541388 52542783 P63 GTRD no Skin (Keratinocyte) 108033223
chr12 52541458 52541740 ZNF143 GTRD no Epithelial (MCF-7) 21546422
chr12 52541458 52541740 ZNF143 GTRD no Epithelial (MCF-7) 108033224
chr12 52541610 52541614 YY1 TRANSFAC yes 120921904
Genes associated with rs113253827[chr12:52541612], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More