EnhancerDB
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  3. rs11375538[chr1:225946181]
Enhancers that have rs11375538[chr1:225946181]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs11375538[chr1:225946181]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225945273 225946593 SOX2 GTRD no Neural Stem Cells (H9) 21385784
chr1 225945323 225946584 SOX2 GTRD no Neural Stem Cells (H9) 21385785
chr1 225945339 225946552 SOX2 GTRD no Neural Stem Cells (H9) 21385786
chr1 225945375 225946441 SOX2 GTRD no Neural Stem Cells (H9) 21385788
chr1 225945400 225946561 SOX2 GTRD no Neural Stem Cells (H9) 21385789
chr1 225945436 225946685 SOX2 GTRD no Neural Stem Cells (H9) 21385791
chr1 225945924 225946550 ZNF274 GTRD no Liver (HepG2) 21385795
chr1 225946099 225946328 SOX2 GTRD no Neural Stem Cells (H9) 21385796
chr1 225946121 225946477 ZNF274 GTRD no Liver (HepG2) 21385797
chr1 225946126 225946581 SOX2 GTRD no Neural Stem Cells (H9) 21385798
chr1 225946128 225946540 SOX2 GTRD no Neural Stem Cells (H9) 21385799
chr1 225946150 225946376 ZNF274 GTRD no Liver (HepG2) 21385800
chr1 225946172 225946184 E2F8 JASPAR yes 35768253
chr1 225946175 225946190 FOXP1 JASPAR yes 35768254
chr1 225946175 225946196 IRF1 JASPAR yes 35768255
chr1 225946180 225946195 STAT2 JASPAR yes 35768256
chr1 225946181 225946196 FOXP1 JASPAR yes 35768257
Genes associated with rs11375538[chr1:225946181], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More