EnhancerDB
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  3. rs115060775[chr12:65020309]
Enhancers that have rs115060775[chr12:65020309]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 65008245 65038815 enh2404
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs115060775[chr12:65020309]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 65019971 65020350 SOX2 GTRD no Neural Stem Cells (H9) 21552884
chr12 65019971 65020350 SOX2 GTRD no Neural Stem Cells (H9) 108041893
chr12 65020294 65020309 HNF1A JASPAR yes 121417629
chr12 65020298 65020314 SOX8 JASPAR yes 121417631
Genes associated with rs115060775[chr12:65020309], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More