EnhancerDB
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  3. rs115425489[chr1:153479563]
Enhancers that have rs115425489[chr1:153479563]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 153476105 153501977 enh12269
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs115425489[chr1:153479563]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 153477945 153479566 ZNF143 GTRD no Epithelial (MCF-7) 21339427
chr1 153478609 153479985 ZNF274 GTRD no Cervix (HeLa-S3) 21339440
chr1 153479244 153479708 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21339444
chr1 153479315 153479625 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21339446
chr1 153479353 153479568 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21339447
chr1 153479367 153479698 ZNF274 GTRD no Bone Marrow (K562) 21339448
chr1 153479376 153479688 ZNF274 GTRD no Bone Marrow (K562) 21339449
chr1 153479432 153479672 ZNF274 GTRD no Bone Marrow (K562) 21339450
chr1 153479542 153480022 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21339451
chr1 153479561 153479576 NR2C2 JASPAR yes 32254348
Genes associated with rs115425489[chr1:153479563], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More