EnhancerDB
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  3. rs11578088[chr1:181111106]
Enhancers that have rs11578088[chr1:181111106]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 181093745 181114755 enh791
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs11578088[chr1:181111106]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 181107215 181114093 ZNF143 GTRD no Epithelial (MCF-7) 21356118
chr1 181107215 181114093 ZNF143 GTRD no Epithelial (MCF-7) 107849439
chr1 181110641 181111145 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21356171
chr1 181110641 181111145 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107849452
chr1 181110649 181111179 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21356172
chr1 181110649 181111179 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107849453
chr1 181110690 181111133 ZNF143 GTRD no Epithelial (MCF-7) 21356180
chr1 181110690 181111133 ZNF143 GTRD no Epithelial (MCF-7) 107849464
chr1 181110820 181111176 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21356191
chr1 181110820 181111176 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107849477
chr1 181110899 181113948 ZBTB33 GTRD no Lung (A549) 107849478
chr1 181111094 181111107 DUXA JASPAR yes 33558282
chr1 181111094 181111108 ONECUT1 JASPAR yes 33558283
chr1 181111094 181111108 ONECUT2 JASPAR yes 33558284
chr1 181111094 181111108 ONECUT3 JASPAR yes 33558285
chr1 181111095 181111106 DUX4 JASPAR yes 33558288
Genes associated with rs11578088[chr1:181111106], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 180941861 180992047 - STX6 ENSG00000135823.9 180992047 119059 Heart 0.0456407 1623