EnhancerDB
  1. Home
  2. SNP
  3. rs116002064[chr1:16520861]
Enhancers that have rs116002064[chr1:16520861]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16486025 16524255 enh11545
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs116002064[chr1:16520861]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16520860 16520878 IRF2 JASPAR yes 27034411
Genes associated with rs116002064[chr1:16520861], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 15898848 15911605 - AGMAT ENSG00000116771.5 15911605 609256 Lung 0.338478 211