EnhancerDB
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  3. rs116038342[chr1:55049719]
Enhancers that have rs116038342[chr1:55049719]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55021705 55049987 enh11873
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs116038342[chr1:55049719]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55049712 55049725 ZBTB18 JASPAR yes 28995659
chr1 55049714 55049724 MSC JASPAR yes 28995660
chr1 55049714 55049724 MYF6 JASPAR yes 28995661
chr1 55049714 55049724 NHLH1 JASPAR yes 28995662
chr1 55049714 55049724 TFAP4 JASPAR yes 28995663
chr1 55049715 55049728 SCRT2 JASPAR yes 28995664
Genes associated with rs116038342[chr1:55049719], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More