EnhancerDB
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  3. rs116054509[chr12:125389032]
Enhancers that have rs116054509[chr12:125389032]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125380716 125396135 enh2679
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs116054509[chr12:125389032]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125388822 125389098 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21583323
chr12 125388862 125389152 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21583324
chr12 125388862 125389152 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108070215
chr12 125389012 125389542 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21583325
chr12 125389012 125389542 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108070216
chr12 125389020 125389536 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21583326
chr12 125389020 125389536 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108070217
chr12 125389023 125389038 ZIC3 JASPAR yes 124431905
chr12 125389023 125389038 ZIC4 JASPAR yes 124431906
chr12 125389024 125389038 ZIC1 JASPAR yes 124431907
Genes associated with rs116054509[chr12:125389032], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More