EnhancerDB
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  3. rs116097493[chr1:55042620]
Enhancers that have rs116097493[chr1:55042620]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55021705 55049987 enh11873
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs116097493[chr1:55042620]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55042615 55042630 MEF2A JASPAR yes 28994691
chr1 55042616 55042628 MEF2A JASPAR yes 28994692
chr1 55042616 55042628 MEF2B JASPAR yes 28994693
chr1 55042616 55042628 MEF2D JASPAR yes 28994694
chr1 55042617 55042627 MEF2A JASPAR yes 28994695
chr1 55042618 55042629 CDX2 JASPAR yes 28994696
chr1 55042619 55042630 HOXA10 JASPAR yes 28994697
chr1 55042620 55042629 CDX1 JASPAR yes 28994698
chr1 55042620 55042630 HOXA13 JASPAR yes 28994699
chr1 55042620 55042630 HOXB13 JASPAR yes 28994700
chr1 55042620 55042630 HOXD13 JASPAR yes 28994701
Genes associated with rs116097493[chr1:55042620], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More