EnhancerDB
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  3. rs116227750[chr17:80239890]
Enhancers that have rs116227750[chr17:80239890]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 80234785 80270055 enh4646
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673)
chr17 80239829 80239997 vista26456
VISTA
Transcript factors that have rs116227750[chr17:80239890]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 80239518 80239902 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21798522
chr17 80239518 80239902 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108311410
chr17 80239731 80240101 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21798526
chr17 80239731 80240101 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108311412
chr17 80239754 80240138 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21798527
chr17 80239754 80240138 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108311413
chr17 80239756 80240076 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21798528
chr17 80239756 80240076 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108311414
chr17 80239759 80240235 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21798529
chr17 80239759 80240235 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108311415
chr17 80239784 80240180 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21798530
chr17 80239784 80240180 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108311416
chr17 80239797 80240061 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21798531
chr17 80239797 80240061 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108311417
chr17 80239814 80240124 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21798532
chr17 80239814 80240124 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108311418
chr17 80239854 80240109 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21798533
chr17 80239854 80240109 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108311419
chr17 80239876 80240226 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108311420
chr17 80239882 80239892 EN2 JASPAR yes 21321662
chr17 80239882 80239892 ESX1 JASPAR yes 21321663
chr17 80239882 80239892 GBX1 JASPAR yes 21321664
chr17 80239882 80239892 GBX2 JASPAR yes 21321665
chr17 80239882 80239892 GSX1 JASPAR yes 21321666
chr17 80239882 80239892 LBX2 JASPAR yes 21321667
chr17 80239882 80239892 LHX2 JASPAR yes 21321668
chr17 80239882 80239892 EN2 JASPAR yes 56357134
chr17 80239882 80239892 ESX1 JASPAR yes 56357135
chr17 80239882 80239892 GBX1 JASPAR yes 56357136
chr17 80239882 80239892 GBX2 JASPAR yes 56357137
chr17 80239882 80239892 GSX1 JASPAR yes 56357138
chr17 80239882 80239892 LBX2 JASPAR yes 56357139
chr17 80239882 80239892 LHX2 JASPAR yes 56357140
chr17 80239882 80240078 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21798534
chr17 80239882 80240078 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108311421
chr17 80239883 80239891 BARX1 JASPAR yes 21321669
chr17 80239883 80239891 BSX JASPAR yes 21321670
chr17 80239883 80239891 EN1 JASPAR yes 21321671
chr17 80239883 80239891 ISX JASPAR yes 21321672
chr17 80239883 80239891 LHX9 JASPAR yes 21321673
chr17 80239883 80239891 MSX1 JASPAR yes 21321674
chr17 80239883 80239891 MSX2 JASPAR yes 21321675
chr17 80239883 80239891 PRRX1 JASPAR yes 21321676
chr17 80239883 80239891 RAX2 JASPAR yes 21321677
chr17 80239883 80239891 SHOX JASPAR yes 21321678
chr17 80239883 80239891 BARX1 JASPAR yes 56357141
chr17 80239883 80239891 BSX JASPAR yes 56357142
chr17 80239883 80239891 EN1 JASPAR yes 56357143
chr17 80239883 80239891 ISX JASPAR yes 56357144
chr17 80239883 80239891 LHX9 JASPAR yes 56357145
chr17 80239883 80239891 MSX1 JASPAR yes 56357146
chr17 80239883 80239891 MSX2 JASPAR yes 56357147
chr17 80239883 80239891 PRRX1 JASPAR yes 56357148
chr17 80239883 80239891 RAX2 JASPAR yes 56357149
chr17 80239883 80239891 SHOX JASPAR yes 56357150
chr17 80239889 80239893 LFA1 TRANSFAC yes 21321679
chr17 80239889 80239893 LFA1 TRANSFAC yes 56357151
Genes associated with rs116227750[chr17:80239890], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More