EnhancerDB
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  3. rs116364191[chr19:2530425]
Enhancers that have rs116364191[chr19:2530425]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2521384 2555115 enh4959
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs116364191[chr19:2530425]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2528643 2530457 TCF7L2 GTRD no Colon (HCT116) 21836260
chr19 2528643 2530457 TCF7L2 GTRD no Colon (HCT116) 108361277
chr19 2528643 2530457 TCF7L2 GTRD no Colon (HCT116) 108361278
chr19 2529658 2530666 TCF7L2 GTRD no Colon (HCT116) 21836480
chr19 2529658 2530666 TCF7L2 GTRD no Colon (HCT116) 108361542
chr19 2530409 2530430 IRF1 JASPAR yes 112070022
chr19 2530412 2530433 IRF1 JASPAR yes 112070023
chr19 2530413 2530428 FOXP1 JASPAR yes 112070024
Genes associated with rs116364191[chr19:2530425], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More