EnhancerDB
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  3. rs116522963[chr1:185620326]
Enhancers that have rs116522963[chr1:185620326]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 185611645 185629075 enh12480
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Kidney Stomach Skin (Keratinocyte) Epithelial (MCF-7) Ovary Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs116522963[chr1:185620326]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 185619783 185620379 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21359472
chr1 185619984 185620580 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21359473
chr1 185620322 185620331 NFIX JASPAR yes 33830747
chr1 185620323 185620329 NFIC JASPAR yes 33830748
Genes associated with rs116522963[chr1:185620326], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More