EnhancerDB
  1. Home
  2. SNP
  3. rs116556230[chr1:55440114]
Enhancers that have rs116556230[chr1:55440114]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55426360 55441461 enh371
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Muscle (A673) Placenta Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Neural Stem Cells (H9) Stomach
Transcript factors that have rs116556230[chr1:55440114]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55440102 55440120 MAFF JASPAR yes 29012781
chr1 55440103 55440114 NFE2L2 JASPAR yes 29012782
chr1 55440103 55440118 MAFK JASPAR yes 29012783
chr1 55440107 55440118 NRL JASPAR yes 29012784
chr1 55440109 55440120 CDX2 JASPAR yes 29012785
chr1 55440110 55440121 HOXA10 JASPAR yes 29012786
chr1 55440111 55440120 CDX1 JASPAR yes 29012787
chr1 55440111 55440121 HOXA13 JASPAR yes 29012788
chr1 55440111 55440121 HOXB13 JASPAR yes 29012789
chr1 55440111 55440121 HOXD13 JASPAR yes 29012790
Genes associated with rs116556230[chr1:55440114], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More