EnhancerDB
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  3. rs116620881[chr1:153495954]
Enhancers that have rs116620881[chr1:153495954]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 153476105 153501977 enh12269
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs116620881[chr1:153495954]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 153494812 153496121 TCF7L2 GTRD no Colon (HCT116) 21339674
chr1 153494857 153496158 ZNF143 GTRD no Epithelial (MCF-7) 21339684
chr1 153494869 153496138 ZNF143 GTRD no Epithelial (MCF-7) 21339686
chr1 153495440 153496109 TCF7L2 GTRD no Colon (HCT116) 21339705
chr1 153495467 153496191 TCF7L2 GTRD no Colon (HCT116) 21339706
chr1 153495522 153496045 TCF7L2 GTRD no Colon (HCT116) 21339707
chr1 153495552 153496155 ZNF274 GTRD no Bone Marrow (K562) 21339708
chr1 153495642 153496096 ZNF143 GTRD no Epithelial (MCF-7) 21339709
chr1 153495646 153496050 TCF7L2 GTRD no Colon (HCT116) 21339710
chr1 153495948 153495959 CEBPB JASPAR yes 32256806
chr1 153495948 153495961 ATF4 JASPAR yes 32256807
Genes associated with rs116620881[chr1:153495954], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 153012201 153014407 - SPRR2D ENSG00000163216.6 153014407 481547 Pancreas 0.389992 1252