EnhancerDB
  1. Home
  2. SNP
  3. rs116628489[chr1:54839000]
Enhancers that have rs116628489[chr1:54839000]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54820685 54854719 enh11867
Bone Marrow (K562) Liver Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Stomach Brain (SK-N-SH) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Blood (GM12878) Placenta Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs116628489[chr1:54839000]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54838997 54839012 STAT2 JASPAR yes 28979363
chr1 54838998 54839012 STAT1 JASPAR yes 28979364
Genes associated with rs116628489[chr1:54839000], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More