EnhancerDB
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  3. rs116819238[chr17:55635039]
Enhancers that have rs116819238[chr17:55635039]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55607567 55641035 enh4490
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Stomach Brain (SK-N-SH) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Large Intestine Blood (GM12878) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs116819238[chr17:55635039]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 55635033 55635046 SMAD2 JASPAR yes 54969328
chr17 55635039 55635048 SNAI2 JASPAR yes 54969329
chr17 55635039 55635049 ID4 JASPAR yes 54969330
chr17 55635039 55635049 TCF3 JASPAR yes 54969331
chr17 55635039 55635049 TCF4 JASPAR yes 54969332
Genes associated with rs116819238[chr17:55635039], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More