EnhancerDB
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  3. rs116879852[chr1:231522740]
Enhancers that have rs116879852[chr1:231522740]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 231515558 231535204 enh984
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs116879852[chr1:231522740]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 231522721 231522740 REST JASPAR yes 36087641
chr1 231522732 231522742 MSC JASPAR yes 36087642
chr1 231522736 231522749 SCRT2 JASPAR yes 36087643
chr1 231522736 231522751 SCRT1 JASPAR yes 36087644
chr1 231522740 231522749 SNAI2 JASPAR yes 36087645
chr1 231522740 231522750 FIGLA JASPAR yes 36087646
chr1 231522740 231522750 ID4 JASPAR yes 36087647
chr1 231522740 231522750 TCF3 JASPAR yes 36087648
chr1 231522740 231522750 TCF4 JASPAR yes 36087649
Genes associated with rs116879852[chr1:231522740], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More