EnhancerDB
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  3. rs116989542[chr17:40408934]
Enhancers that have rs116989542[chr17:40408934]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 40390345 40414201 enh4414
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Liver (HepG2) Heart
Transcript factors that have rs116989542[chr17:40408934]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 40408923 40408934 HOXA10 JASPAR yes 54290585
chr17 40408924 40408935 CDX2 JASPAR yes 54290587
chr17 40408932 40408941 SOX9 JASPAR yes 54290588
Genes associated with rs116989542[chr17:40408934], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More