EnhancerDB
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  3. rs117155756[chr1:225945873]
Enhancers that have rs117155756[chr1:225945873]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs117155756[chr1:225945873]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225941037 225946019 STAT3 GTRD no Blood (OCI-LY7) 21385734
chr1 225945273 225946593 SOX2 GTRD no Neural Stem Cells (H9) 21385784
chr1 225945323 225946584 SOX2 GTRD no Neural Stem Cells (H9) 21385785
chr1 225945339 225946552 SOX2 GTRD no Neural Stem Cells (H9) 21385786
chr1 225945366 225946083 SOX2 GTRD no Neural Stem Cells (H9) 21385787
chr1 225945375 225946441 SOX2 GTRD no Neural Stem Cells (H9) 21385788
chr1 225945400 225946561 SOX2 GTRD no Neural Stem Cells (H9) 21385789
chr1 225945434 225946040 SOX2 GTRD no Neural Stem Cells (H9) 21385790
chr1 225945436 225946685 SOX2 GTRD no Neural Stem Cells (H9) 21385791
chr1 225945481 225946013 SOX2 GTRD no Neural Stem Cells (H9) 21385792
chr1 225945521 225946015 SOX2 GTRD no Neural Stem Cells (H9) 21385793
chr1 225945666 225946061 SOX2 GTRD no Neural Stem Cells (H9) 21385794
chr1 225945868 225945884 RFX2 JASPAR yes 35768208
chr1 225945868 225945884 RFX3 JASPAR yes 35768209
chr1 225945868 225945884 RFX4 JASPAR yes 35768210
chr1 225945868 225945884 RFX5 JASPAR yes 35768211
chr1 225945869 225945888 RFX2 JASPAR yes 35768212
chr1 225945871 225945887 SOX4 JASPAR yes 35768213
Genes associated with rs117155756[chr1:225945873], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More