EnhancerDB
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  3. rs117297239[chr19:13149330]
Enhancers that have rs117297239[chr19:13149330]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13138760 13157647 enh17929
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs117297239[chr19:13149330]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13148507 13149915 TEF1 GTRD no Bone (Osteoblast) 21850251
chr19 13148507 13149915 TEF1 GTRD no Bone (Osteoblast) 108387634
chr19 13148599 13153768 ZNF274 GTRD no Liver (HepG2) 21850252
chr19 13148599 13153768 ZNF274 GTRD no Liver (HepG2) 108387635
chr19 13148599 13153768 ZNF274 GTRD no Liver (HepG2) 108387636
chr19 13148689 13159025 ZNF274 GTRD no Blood (GM12878) 108387639
chr19 13148689 13159025 ZNF274 GTRD no Blood (GM12878) 108387640
chr19 13148689 13159025 ZNF274 GTRD no Blood (GM12878) 108387641
chr19 13148768 13157587 ZNF274 GTRD no Bone Marrow (K562) 108387642
chr19 13148768 13157587 ZNF274 GTRD no Bone Marrow (K562) 108387643
chr19 13148768 13157587 ZNF274 GTRD no Bone Marrow (K562) 108387644
chr19 13148794 13156625 ZNF274 GTRD no Liver (HepG2) 21850253
chr19 13148794 13156625 ZNF274 GTRD no Liver (HepG2) 108387645
chr19 13148794 13156625 ZNF274 GTRD no Liver (HepG2) 108387646
chr19 13148794 13156625 ZNF274 GTRD no Liver (HepG2) 108387647
chr19 13148868 13151029 ZNF274 GTRD no Cervix (HeLa-S3) 21850254
chr19 13148868 13151029 ZNF274 GTRD no Cervix (HeLa-S3) 108387649
chr19 13148928 13151715 ZNF274 GTRD no Bone Marrow (K562) 108387651
chr19 13149029 13149811 ZNF274 GTRD no Bone Marrow (K562) 108387652
chr19 13149087 13156637 ZNF274 GTRD no Liver (HepG2) 21850256
chr19 13149087 13156637 ZNF274 GTRD no Liver (HepG2) 108387653
chr19 13149087 13156637 ZNF274 GTRD no Liver (HepG2) 108387654
chr19 13149149 13154869 ZNF274 GTRD no Liver (HepG2) 21850257
chr19 13149149 13154869 ZNF274 GTRD no Liver (HepG2) 108387655
chr19 13149160 13154841 TCF7L2 GTRD no Colon (HCT116) 21850258
chr19 13149160 13154841 TCF7L2 GTRD no Colon (HCT116) 108387656
chr19 13149214 13154238 TCF7L2 GTRD no Colon (HCT116) 21850259
chr19 13149214 13154238 TCF7L2 GTRD no Colon (HCT116) 108387657
chr19 13149236 13158932 ZNF274 GTRD no Blood (GM12878) 108387658
chr19 13149236 13158932 ZNF274 GTRD no Blood (GM12878) 108387659
chr19 13149237 13156885 ZNF274 GTRD no Blood (GM12878) 108387660
chr19 13149237 13156885 ZNF274 GTRD no Blood (GM12878) 108387661
chr19 13149249 13156820 ZNF274 GTRD no Liver (HepG2) 21850260
chr19 13149249 13156820 ZNF274 GTRD no Liver (HepG2) 108387662
chr19 13149249 13156820 ZNF274 GTRD no Liver (HepG2) 108387663
chr19 13149275 13156793 ZNF274 GTRD no Bone Marrow (K562) 108387664
chr19 13149275 13156793 ZNF274 GTRD no Bone Marrow (K562) 108387665
chr19 13149287 13157628 ZNF274 GTRD no Bone Marrow (K562) 108387666
chr19 13149287 13157628 ZNF274 GTRD no Bone Marrow (K562) 108387667
chr19 13149294 13158131 ZNF274 GTRD no Blood (GM12878) 108387668
chr19 13149294 13158131 ZNF274 GTRD no Blood (GM12878) 108387669
chr19 13149298 13156691 ZNF274 GTRD no Cervix (HeLa-S3) 21850261
chr19 13149298 13156691 ZNF274 GTRD no Cervix (HeLa-S3) 108387670
chr19 13149298 13156691 ZNF274 GTRD no Cervix (HeLa-S3) 108387671
chr19 13149309 13149330 ZNF263 JASPAR yes 112503781
chr19 13149313 13149334 ZNF263 JASPAR yes 112503782
chr19 13149324 13149337 SMAD2 JASPAR yes 112503783
chr19 13149327 13154182 TCF7L2 GTRD no Colon (HCT116) 21850262
chr19 13149327 13154182 TCF7L2 GTRD no Colon (HCT116) 108387672
chr19 13149327 13156813 ZNF274 GTRD no Cervix (HeLa-S3) 21850263
chr19 13149327 13156813 ZNF274 GTRD no Cervix (HeLa-S3) 108387673
chr19 13149327 13156813 ZNF274 GTRD no Cervix (HeLa-S3) 108387674
Genes associated with rs117297239[chr19:13149330], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More