EnhancerDB
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  3. rs117502142[chr12:52594490]
Enhancers that have rs117502142[chr12:52594490]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52591245 52620175 enh14727
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs117502142[chr12:52594490]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52594289 52594859 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546609
chr12 52594289 52594859 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033586
chr12 52594322 52594792 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546610
chr12 52594322 52594792 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033588
chr12 52594322 52594827 GATA3 UCSC Txn Factor no Conserved 108033589
chr12 52594383 52594879 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546611
chr12 52594383 52594879 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033590
chr12 52594396 52594749 GATA2 UCSC Txn Factor no Conserved 108033591
chr12 52594479 52594492 SCRT2 JASPAR yes 120926983
chr12 52594490 52594501 FOXA1 JASPAR yes 120926984
Genes associated with rs117502142[chr12:52594490], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More