EnhancerDB
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  3. rs117544199[chr3:56962747]
Enhancers that have rs117544199[chr3:56962747]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 56948005 56967995 enh7237
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs117544199[chr3:56962747]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 56962735 56962754 CTCF JASPAR yes 2612618
chr3 56962739 56962753 GLIS2 JASPAR yes 2612620
Genes associated with rs117544199[chr3:56962747], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More