EnhancerDB
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  3. rs117591377[chr2:38943942]
Enhancers that have rs117591377[chr2:38943942]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 38916069 38955355 enh5435
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Ovary Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs117591377[chr2:38943942]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 38943938 38943950 PKNOX2 JASPAR yes 73169152
chr2 38943939 38943949 ID4 JASPAR yes 73169153
chr2 38943939 38943949 TCF3 JASPAR yes 73169154
chr2 38943939 38943949 TCF4 JASPAR yes 73169155
chr2 38943940 38943949 SNAI2 JASPAR yes 73169156
chr2 38943941 38943946 USF2 TRANSFAC yes 73169157
Genes associated with rs117591377[chr2:38943942], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More